Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014895A_C01 KMC014895A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89033.1| P0415C01.11 [Oryza sativa (japonica cultivar-gro... 62 5e-09
ref|NP_192721.1| putative protein; protein id: At4g09830.1, supp... 61 7e-09
gb|AAM62508.1| unknown [Arabidopsis thaliana] 61 7e-09
gb|EAA19823.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium y... 32 3.5
gb|AAM62535.1| unknown [Arabidopsis thaliana] 32 4.5
>dbj|BAB89033.1| P0415C01.11 [Oryza sativa (japonica cultivar-group)]
Length = 200
Score = 61.6 bits (148), Expect = 5e-09
Identities = 34/71 (47%), Positives = 46/71 (63%)
Frame = -2
Query: 520 NQTKNSVFSNALSSPVRRSLQHYEIGEGGNYPSGLSMGNGNRNTEHSFVHQQSRDATGFS 341
+Q+KN++FSNALSSPVRRSLQ Y + +G GNG RN E + Q+R+
Sbjct: 132 DQSKNTIFSNALSSPVRRSLQSYHLTQGS--------GNGGRNAETNSA-GQNRETNSGG 182
Query: 340 SNDSAMDMHAD 308
SND++MDM +D
Sbjct: 183 SNDTSMDMVSD 193
>ref|NP_192721.1| putative protein; protein id: At4g09830.1, supported by cDNA:
142381., supported by cDNA: gi_18377768, supported by
cDNA: gi_20259186 [Arabidopsis thaliana]
gi|7459449|pir||T04031 hypothetical protein F17A8.180 -
Arabidopsis thaliana gi|4538913|emb|CAB39650.1| putative
protein [Arabidopsis thaliana]
gi|7267679|emb|CAB78106.1| putative protein [Arabidopsis
thaliana] gi|18377769|gb|AAL67034.1| unknown protein
[Arabidopsis thaliana] gi|20259187|gb|AAM14309.1|
unknown protein [Arabidopsis thaliana]
Length = 191
Score = 61.2 bits (147), Expect = 7e-09
Identities = 35/72 (48%), Positives = 47/72 (64%)
Frame = -2
Query: 523 DNQTKNSVFSNALSSPVRRSLQHYEIGEGGNYPSGLSMGNGNRNTEHSFVHQQSRDATGF 344
+NQ KNSVFSNALSSP+RRSLQ+Y+I +G G + G R++E +R +
Sbjct: 131 ENQAKNSVFSNALSSPIRRSLQNYQIPQG-----GYTSGGTTRSSE------VNRGSNSP 179
Query: 343 SSNDSAMDMHAD 308
S DS+MDMHA+
Sbjct: 180 GSIDSSMDMHAE 191
>gb|AAM62508.1| unknown [Arabidopsis thaliana]
Length = 191
Score = 61.2 bits (147), Expect = 7e-09
Identities = 35/72 (48%), Positives = 47/72 (64%)
Frame = -2
Query: 523 DNQTKNSVFSNALSSPVRRSLQHYEIGEGGNYPSGLSMGNGNRNTEHSFVHQQSRDATGF 344
+NQ KNSVFSNALSSP+RRSLQ+Y+I +G G + G R++E +R +
Sbjct: 131 ENQAKNSVFSNALSSPIRRSLQNYQIPQG-----GYTSGGTTRSSE------VNRGSNSP 179
Query: 343 SSNDSAMDMHAD 308
S DS+MDMHA+
Sbjct: 180 GSIDSSMDMHAE 191
>gb|EAA19823.1| ERYTHROCYTE MEMBRANE PROTEIN PFEMP3 [Plasmodium yoelii yoelii]
Length = 1566
Score = 32.3 bits (72), Expect = 3.5
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = -2
Query: 520 NQTKNSVFSNALSSPVRRSLQHYEIGEGGNYPSGLSMGNGNRNTEHSFVHQQSRDATGFS 341
N TK + +N+ S + +SLQH+ E N S L G N N H+ + ++ D
Sbjct: 954 NNTKYLI-NNSSSVYMNQSLQHHSAHENNNSSSSLINGKHNNNYAHNVIKNKNYDHDNED 1012
Query: 340 SN 335
+N
Sbjct: 1013 AN 1014
>gb|AAM62535.1| unknown [Arabidopsis thaliana]
Length = 175
Score = 32.0 bits (71), Expect = 4.5
Identities = 20/46 (43%), Positives = 25/46 (53%)
Frame = -2
Query: 520 NQTKNSVFSNALSSPVRRSLQHYEIGEGGNYPSGLSMGNGNRNTEH 383
NQ K + N LSSPVRR+LQ + + E SG + N N EH
Sbjct: 130 NQEKLLIPPNGLSSPVRRTLQDFNLCEA---ESGNNNYNPNSTGEH 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,180,839
Number of Sequences: 1393205
Number of extensions: 9478750
Number of successful extensions: 23332
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23258
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
