Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014882A_C01 KMC014882A_c01
(742 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565106.1| expressed protein; protein id: At1g75240.1, sup... 82 1e-14
ref|NP_190658.1| putative protein; protein id: At3g50890.1, supp... 81 1e-14
gb|AAM63229.1| unknown [Arabidopsis thaliana] 81 1e-14
gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa] 81 1e-14
gb|AAO38827.1| putative ZF-HD homeobox protein [Oryza sativa (ja... 80 2e-14
>ref|NP_565106.1| expressed protein; protein id: At1g75240.1, supported by cDNA:
10873. [Arabidopsis thaliana] gi|25406424|pir||G96782
hypothetical protein F22H5.4 [imported] - Arabidopsis
thaliana gi|10092273|gb|AAG12686.1|AC025814_10
hypothetical protein; 24548-23619 [Arabidopsis thaliana]
gi|21536702|gb|AAM61034.1| unknown [Arabidopsis
thaliana]
Length = 309
Score = 81.6 bits (200), Expect = 1e-14
Identities = 33/62 (53%), Positives = 50/62 (80%)
Frame = -3
Query: 677 SKKKRCRTKFSEEQKGKMLEFSEKLGWRMQREEEGSIPKFCDGIGVSREVFKVWMHHHQS 498
S KKR RTKF+ +QK +M++F+EKLGWRM +++E + +FC IGV R+VFKVWMH++++
Sbjct: 238 SSKKRFRTKFTTDQKERMMDFAEKLGWRMNKQDEEELKRFCGEIGVKRQVFKVWMHNNKN 297
Query: 497 RS 492
+
Sbjct: 298 NA 299
>ref|NP_190658.1| putative protein; protein id: At3g50890.1, supported by cDNA:
20695. [Arabidopsis thaliana] gi|7485700|pir||T08410
hypothetical protein F18B3.170 - Arabidopsis thaliana
gi|4835240|emb|CAB42918.1| putative protein [Arabidopsis
thaliana]
Length = 249
Score = 81.3 bits (199), Expect = 1e-14
Identities = 38/68 (55%), Positives = 52/68 (75%), Gaps = 3/68 (4%)
Frame = -3
Query: 674 KKKRCRTKFSEEQKGKMLEFSEKLGWRMQREEEGSIPKFCDGIGVSREVFKVWMHHHQ-- 501
KKKR RTK +EEQK KM EF+E+LGWRMQ+++E I KFC + + R+VFKVWMH+++
Sbjct: 180 KKKRVRTKINEEQKEKMKEFAERLGWRMQKKDEEEIDKFCRMVNLRRQVFKVWMHNNKQA 239
Query: 500 -SRSSSEI 480
R++S I
Sbjct: 240 MKRNNSNI 247
>gb|AAM63229.1| unknown [Arabidopsis thaliana]
Length = 249
Score = 81.3 bits (199), Expect = 1e-14
Identities = 38/68 (55%), Positives = 52/68 (75%), Gaps = 3/68 (4%)
Frame = -3
Query: 674 KKKRCRTKFSEEQKGKMLEFSEKLGWRMQREEEGSIPKFCDGIGVSREVFKVWMHHHQ-- 501
KKKR RTK +EEQK KM EF+E+LGWRMQ+++E I KFC + + R+VFKVWMH+++
Sbjct: 180 KKKRVRTKINEEQKEKMKEFAERLGWRMQKKDEEEIDKFCRMVNLRRQVFKVWMHNNKQA 239
Query: 500 -SRSSSEI 480
R++S I
Sbjct: 240 MKRNNSNI 247
>gb|AAD39591.1|AC007858_5 10A19I.6 [Oryza sativa]
Length = 376
Score = 81.3 bits (199), Expect = 1e-14
Identities = 34/66 (51%), Positives = 51/66 (76%)
Frame = -3
Query: 674 KKKRCRTKFSEEQKGKMLEFSEKLGWRMQREEEGSIPKFCDGIGVSREVFKVWMHHHQSR 495
++KR RTKF+ EQK +ML F+E++GWRMQ+++E + +FC +GV R+VFKVWMH+++S
Sbjct: 292 RRKRFRTKFTPEQKEQMLAFAERVGWRMQKQDEALVEQFCAQVGVRRQVFKVWMHNNKSS 351
Query: 494 SSSEIG 477
S G
Sbjct: 352 IGSSSG 357
>gb|AAO38827.1| putative ZF-HD homeobox protein [Oryza sativa (japonica
cultivar-group)]
Length = 238
Score = 80.5 bits (197), Expect = 2e-14
Identities = 42/90 (46%), Positives = 55/90 (60%), Gaps = 6/90 (6%)
Frame = -3
Query: 671 KKRCRTKFSEEQKGKMLEFSEKLGWRMQREEEGSIP------KFCDGIGVSREVFKVWMH 510
++R RTKF+EEQK +ML F+E+LGWRM + E G P +FC IGV+R+VFKVWMH
Sbjct: 119 RRRTRTKFTEEQKARMLRFAERLGWRMPKREPGRAPGDDEVARFCREIGVNRQVFKVWMH 178
Query: 509 HHQSRSSSEIGNEKKIHGGGYGFQLLSDIT 420
+H++ G G G G Q S T
Sbjct: 179 NHKAGGGGG-GGGSGGPGAGGGAQTSSSTT 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 649,320,284
Number of Sequences: 1393205
Number of extensions: 14802793
Number of successful extensions: 43770
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 40938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43598
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
