Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014878A_C01 KMC014878A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana taba... 177 1e-43
gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana taba... 177 1e-43
gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus] 175 4e-43
gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum] 172 2e-42
pir||T12420 polyadenylate-binding protein - common ice plant (fr... 164 5e-40
>gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 177 bits (448), Expect = 1e-43
Identities = 95/151 (62%), Positives = 112/151 (73%), Gaps = 19/151 (12%)
Frame = -1
Query: 560 VPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGV-------------------GVSIQA 438
VPLMQQQM PRGR YRY PG L +V PG GG+ + + A
Sbjct: 495 VPLMQQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGA 554
Query: 437 LATALADATPEKQRTMLGEVLYPLVNKLEHDAAAKLTGMLLEMDQTEVLHLIESPDALKA 258
LATALA+++P +QRTMLGE LYPLV +LE + AAK+TGMLLEMDQTEVLHL+ESP+ALKA
Sbjct: 555 LATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKA 614
Query: 257 KVAEAMDVLRNVARQQSNTPIDQLASLSLND 165
KVAEAM+VLRNV++QQS+ P DQLASLSLND
Sbjct: 615 KVAEAMEVLRNVSQQQSSNPADQLASLSLND 645
>gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 177 bits (448), Expect = 1e-43
Identities = 95/151 (62%), Positives = 112/151 (73%), Gaps = 19/151 (12%)
Frame = -1
Query: 560 VPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGV-------------------GVSIQA 438
VPLMQQQM PRGR YRY PG L +V PG GG+ + + A
Sbjct: 176 VPLMQQQMFPRGRGYRYPPGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGA 235
Query: 437 LATALADATPEKQRTMLGEVLYPLVNKLEHDAAAKLTGMLLEMDQTEVLHLIESPDALKA 258
LATALA+++P +QRTMLGE LYPLV +LE + AAK+TGMLLEMDQTEVLHL+ESP+ALKA
Sbjct: 236 LATALANSSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKA 295
Query: 257 KVAEAMDVLRNVARQQSNTPIDQLASLSLND 165
KVAEAM+VLRNV++QQS+ P DQLASLSLND
Sbjct: 296 KVAEAMEVLRNVSQQQSSNPADQLASLSLND 326
>gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 175 bits (443), Expect = 4e-43
Identities = 98/151 (64%), Positives = 113/151 (73%), Gaps = 19/151 (12%)
Frame = -1
Query: 560 VPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGV-------------------GVSIQA 438
VPLMQQQM PRGRVYRY PG L ++P+PG AGG+ V + A
Sbjct: 496 VPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGA 555
Query: 437 LATALADATPEKQRTMLGEVLYPLVNKLEHDAAAKLTGMLLEMDQTEVLHLIESPDALKA 258
LA+ALA+ATP++QRTMLGE LYPLV +LE D AAK+TGMLLEMDQTEVLHL+ESP+ALKA
Sbjct: 556 LASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKA 615
Query: 257 KVAEAMDVLRNVARQQSNTPIDQLASLSLND 165
KVAEAM+VLR+VA QQS DQLASLSL D
Sbjct: 616 KVAEAMEVLRSVA-QQSGNAADQLASLSLTD 645
>gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 172 bits (437), Expect = 2e-42
Identities = 95/151 (62%), Positives = 111/151 (72%), Gaps = 19/151 (12%)
Frame = -1
Query: 560 VPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGV-------------------GVSIQA 438
+PLMQQQM PRGR+YRY PG N P+PG GG+ + I
Sbjct: 327 MPLMQQQMLPRGRMYRYPPGRNGPEGPMPGVPGGMLSVPYDMGGMLPRDSAMGQPMPIST 386
Query: 437 LATALADATPEKQRTMLGEVLYPLVNKLEHDAAAKLTGMLLEMDQTEVLHLIESPDALKA 258
LA+ALA+A PE+QRTMLGE LYPLV++LEH+ AAK+TGMLLEMDQTEVLHL+ESP+ALKA
Sbjct: 387 LASALANAPPEQQRTMLGESLYPLVDQLEHEHAAKVTGMLLEMDQTEVLHLLESPEALKA 446
Query: 257 KVAEAMDVLRNVARQQSNTPIDQLASLSLND 165
KVAEAM+VLRNV QQ+ P DQLASLSLND
Sbjct: 447 KVAEAMEVLRNV--QQTTNPADQLASLSLND 475
>pir||T12420 polyadenylate-binding protein - common ice plant (fragment)
gi|2213871|gb|AAB61594.1| poly(A)-binding protein
[Mesembryanthemum crystallinum]
Length = 176
Score = 164 bits (416), Expect = 5e-40
Identities = 93/156 (59%), Positives = 110/156 (69%), Gaps = 24/156 (15%)
Frame = -1
Query: 560 VPLMQQQMHPRGRVYRYRPGHNLQNVPLPGAAGGVGVSIQ------------------AL 435
+P+MQQQM PRGR YRY P L + PLPG GGV +Q L
Sbjct: 19 IPMMQQQMMPRGR-YRYPPARGLPDAPLPGVTGGVLPGVQYDMGGMPIRDLSPTVPVGTL 77
Query: 434 ATALADATPEKQRTMLGEVLYPLVNKLEHDAAAKLTGMLLEMDQTEVLHLIESPDALKAK 255
AT LA+ATPE+QR +LGE LYPLV +LE + AAK+TGMLLEMDQTEVLHL+ESP+ALK+K
Sbjct: 78 ATLLANATPEQQRLLLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPEALKSK 137
Query: 254 VAEAMDVLRNVARQQ------SNTPIDQLASLSLND 165
VAEAM+VLRNVA+QQ S+ P DQLA+LSLND
Sbjct: 138 VAEAMEVLRNVAQQQQQQQQPSSNPADQLAALSLND 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,037,584
Number of Sequences: 1393205
Number of extensions: 10327340
Number of successful extensions: 34069
Number of sequences better than 10.0: 134
Number of HSP's better than 10.0 without gapping: 32644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34037
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
