Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014857A_C01 KMC014857A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179222.1| unknown protein; protein id: At2g16270.1 [Arabi... 59 4e-08
ref|NP_173108.1| hypothetical protei; protein id: At1g16630.1 [A... 59 4e-08
gb|EAA04156.1| agCP3381 [Anopheles gambiae str. PEST] 35 0.61
ref|NP_298890.1| hypothetical protein [Xylella fastidiosa 9a5c] ... 33 3.0
ref|XP_141693.1| similar to DNA segment on chromosome X and Y (u... 32 4.0
>ref|NP_179222.1| unknown protein; protein id: At2g16270.1 [Arabidopsis thaliana]
gi|25372937|pir||E84538 hypothetical protein At2g16270
[imported] - Arabidopsis thaliana
gi|4544400|gb|AAD22310.1| unknown protein [Arabidopsis
thaliana]
Length = 759
Score = 58.9 bits (141), Expect = 4e-08
Identities = 41/85 (48%), Positives = 52/85 (60%), Gaps = 3/85 (3%)
Frame = -3
Query: 515 FQKSSSYSTRVDKKLNEAHSVEKQPKKSVNRRESLASS-SDYSM-SPSYGSLTVYEKIP- 345
FQK SS K + ++ K RRES+ASS S+YS+ S SYGS T YEKIP
Sbjct: 673 FQKKSSCHKEPQSKGGKKNNNNSSSSKL--RRESMASSASEYSIGSFSYGSFTTYEKIPI 730
Query: 344 SQGYGDEEIVTPVRRSSRIRSRVTS 270
G +EE++TPVRRSSRI++ S
Sbjct: 731 KSGREEEEMITPVRRSSRIKNNKPS 755
>ref|NP_173108.1| hypothetical protei; protein id: At1g16630.1 [Arabidopsis thaliana]
gi|25372938|pir||D86301 F19K19.8 protein - Arabidopsis
thaliana gi|9989057|gb|AAG10820.1|AC011808_8 Hypothetical
protein [Arabidopsis thaliana]
Length = 845
Score = 58.9 bits (141), Expect = 4e-08
Identities = 43/89 (48%), Positives = 59/89 (65%), Gaps = 5/89 (5%)
Frame = -3
Query: 533 PSEMS-RFQKSSSYSTRVDKKLN-EAHSVEKQPKKSVNRRESLASS-SDYSM-SPSYGSL 366
PSEMS F K+ + +KK + + H KKS + ES+ASS S+YS+ S SYGS
Sbjct: 751 PSEMSFSFSKNKPLHSCSNKKDDLKEHQSGGGGKKSNDSGESMASSASEYSIGSVSYGSF 810
Query: 365 TVYEKIPSQ-GYGDEEIVTPVRRSSRIRS 282
T YEKI + G+ ++E++TPVRRSSRIR+
Sbjct: 811 TTYEKIQKRSGHEEKEMITPVRRSSRIRN 839
>gb|EAA04156.1| agCP3381 [Anopheles gambiae str. PEST]
Length = 684
Score = 35.0 bits (79), Expect = 0.61
Identities = 30/88 (34%), Positives = 41/88 (46%)
Frame = -3
Query: 533 PSEMSRFQKSSSYSTRVDKKLNEAHSVEKQPKKSVNRRESLASSSDYSMSPSYGSLTVYE 354
P++ + +K S S+ E S E+ +KS R+ L +SS YS SY S YE
Sbjct: 116 PAQTAPEKKEESESSS-----EEESSSEEDTRKS--SRDELRTSSGYSSPTSYRSQNHYE 168
Query: 353 KIPSQGYGDEEIVTPVRRSSRIRSRVTS 270
+ S YG SS +RSR TS
Sbjct: 169 RDESPKYGSSS-----SGSSALRSRTTS 191
>ref|NP_298890.1| hypothetical protein [Xylella fastidiosa 9a5c]
gi|11346037|pir||D82662 hypothetical protein XF1601
[imported] - Xylella fastidiosa (strain 9a5c)
gi|9106648|gb|AAF84410.1|AE003987_14 hypothetical
protein [Xylella fastidiosa 9a5c]
Length = 325
Score = 32.7 bits (73), Expect = 3.0
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 268 GEVTRLLILLERLTGVTISSSPYPW 342
G VTRLL+LL G+ I+ PYPW
Sbjct: 144 GMVTRLLLLLVASIGLLIAGQPYPW 168
>ref|XP_141693.1| similar to DNA segment on chromosome X and Y (unique) 155 expressed
sequence; DNA segment, single copy, homologous on X and
Y, expressed probes; Pseudoautosomal gene XE7 (Y
chromosome) [Homo sapiens] [Mus musculus]
Length = 976
Score = 32.3 bits (72), Expect = 4.0
Identities = 20/66 (30%), Positives = 33/66 (49%)
Frame = -3
Query: 479 KKLNEAHSVEKQPKKSVNRRESLASSSDYSMSPSYGSLTVYEKIPSQGYGDEEIVTPVRR 300
+K + + ++ KK N + +AS +D +SP+ G EKI S G D + +
Sbjct: 664 QKTGKINYAKEFTKKLKNHCKDIASETDEHLSPTDGESYPVEKIHSHGVKDSQHIRKSPV 723
Query: 299 SSRIRS 282
SS +RS
Sbjct: 724 SSSLRS 729
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,037,397
Number of Sequences: 1393205
Number of extensions: 8118406
Number of successful extensions: 25584
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 21999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25220
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
