Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014848A_C01 KMC014848A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA85457.1| S-locus protein 8 [Brassica rapa] 164 4e-40
ref|NP_176825.1| formyl transferase, putative; protein id: At1g6... 162 2e-39
emb|CAB89181.1| Fmt protein [Brassica napus var. napus] 161 5e-39
emb|CAC79542.1| fmt putative protein [Brassica napus] 132 2e-30
dbj|BAB85357.1| similar to formyl transferase [Oryza sativa (jap... 107 1e-22
>dbj|BAA85457.1| S-locus protein 8 [Brassica rapa]
Length = 197
Score = 164 bits (416), Expect = 4e-40
Identities = 81/113 (71%), Positives = 91/113 (79%), Gaps = 1/113 (0%)
Frame = -3
Query: 508 ETWLGFDQEACVLHNKVRAFSGWPGTRAKVLVVD-QNGQQKTLEFKIITTRVCRHENVPF 332
E WL FDQEA VLHNKVRAF+GWPGTRAKVLV+D ++GQQ LE KIITTR+C+ V
Sbjct: 85 EAWLSFDQEAFVLHNKVRAFAGWPGTRAKVLVLDDKSGQQNELELKIITTRICQSTEVLN 144
Query: 331 NEADDIAFVNGALVFPCGRGTALEVLEVQLPGKKVVNAAAFWNGLRGQKLKTL 173
E D + F G+LVFPCG GTALEVLEVQLPGKK ++A AFWNGLRGQKLK L
Sbjct: 145 GEQDYVTFKKGSLVFPCGGGTALEVLEVQLPGKKAIDATAFWNGLRGQKLKKL 197
>ref|NP_176825.1| formyl transferase, putative; protein id: At1g66520.1 [Arabidopsis
thaliana] gi|25320665|pir||H96690 probable formyl
transferase F28G11.15 [imported] - Arabidopsis thaliana
gi|12322271|gb|AAG51166.1|AC074025_16 formyl
transferase, putative [Arabidopsis thaliana]
Length = 355
Score = 162 bits (410), Expect = 2e-39
Identities = 78/113 (69%), Positives = 92/113 (81%), Gaps = 1/113 (0%)
Frame = -3
Query: 508 ETWLGFDQEACVLHNKVRAFSGWPGTRAKVLVVDQ-NGQQKTLEFKIITTRVCRHENVPF 332
E WL FDQEA VLHNKVRAF+GWPGTRAKV+V+D+ +GQQ LE KI++TRVC+ +
Sbjct: 243 EAWLSFDQEAFVLHNKVRAFAGWPGTRAKVVVLDEKSGQQNVLELKIMSTRVCKDLEIQD 302
Query: 331 NEADDIAFVNGALVFPCGRGTALEVLEVQLPGKKVVNAAAFWNGLRGQKLKTL 173
+E D + F G+L+FPC GTALEVLEVQLPGKK +NAAAFWNGLRGQKLK L
Sbjct: 303 SEQDYVTFKKGSLIFPCRGGTALEVLEVQLPGKKAINAAAFWNGLRGQKLKKL 355
>emb|CAB89181.1| Fmt protein [Brassica napus var. napus]
Length = 354
Score = 161 bits (407), Expect = 5e-39
Identities = 79/113 (69%), Positives = 90/113 (78%), Gaps = 1/113 (0%)
Frame = -3
Query: 508 ETWLGFDQEACVLHNKVRAFSGWPGTRAKVLVVD-QNGQQKTLEFKIITTRVCRHENVPF 332
E WL FDQEA +LHNKVRAF+GWPGTRAKVLV+D ++GQQ LE KIITTR+C+ V
Sbjct: 242 EAWLSFDQEAFILHNKVRAFAGWPGTRAKVLVLDDKSGQQNELELKIITTRICQSTEVLN 301
Query: 331 NEADDIAFVNGALVFPCGRGTALEVLEVQLPGKKVVNAAAFWNGLRGQKLKTL 173
E D + F G+LVF CG GTALEVLEVQLPGKK ++A AFWNGLRGQKLK L
Sbjct: 302 GEQDYVTFKKGSLVFSCGGGTALEVLEVQLPGKKAIDATAFWNGLRGQKLKKL 354
>emb|CAC79542.1| fmt putative protein [Brassica napus]
Length = 194
Score = 132 bits (332), Expect = 2e-30
Identities = 65/96 (67%), Positives = 75/96 (77%), Gaps = 1/96 (1%)
Frame = -3
Query: 508 ETWLGFDQEACVLHNKVRAFSGWPGTRAKVLVVD-QNGQQKTLEFKIITTRVCRHENVPF 332
E WL FDQEA +LHNKVRAF+GWPGTRAKVLV+D ++GQQ LE KIITTR+C+ V
Sbjct: 99 EAWLSFDQEAFILHNKVRAFAGWPGTRAKVLVLDDKSGQQNELELKIITTRICQSTEVLN 158
Query: 331 NEADDIAFVNGALVFPCGRGTALEVLEVQLPGKKVV 224
E D + F G+LVF CG GTALEVLEVQLPGKK +
Sbjct: 159 GEQDYVTFKKGSLVFSCGGGTALEVLEVQLPGKKAI 194
>dbj|BAB85357.1| similar to formyl transferase [Oryza sativa (japonica
cultivar-group)]
Length = 343
Score = 107 bits (266), Expect = 1e-22
Identities = 55/110 (50%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Frame = -3
Query: 508 ETWLGFDQEACVLHNKVRAFSGWPGTRAKVLVVDQNGQQKTLEFKIITTRVCRHENVPFN 329
E+WL F+QEA +LHNKVRAF+GWPGTRAK+ +V+QNG+ LE K+I+T+ C
Sbjct: 251 ESWLSFNQEAKLLHNKVRAFAGWPGTRAKLQLVNQNGEPDVLEIKVISTKACA------- 303
Query: 328 EADDIAFVNGALVFPCGR-GTALEVLEVQLPGKKVVNAAAFWNGLRGQKL 182
C + G EV+E+QLPGKKV A FWNGLRGQ+L
Sbjct: 304 --------------SCDKTGDGNEVVELQLPGKKVTTARDFWNGLRGQRL 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,600,426
Number of Sequences: 1393205
Number of extensions: 9976603
Number of successful extensions: 24549
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 23804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24500
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
