Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014844A_C01 KMC014844A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200119.1| putative protein; protein id: At5g53070.1 [Arab... 97 2e-19
gb|ZP_00069198.1| hypothetical protein [Oenococcus oeni MCW] gi|... 34 1.2
gb|AAC15831.1| articulin 4 [Pseudomicrothorax dubius] 32 4.6
gb|EAA10093.1| agCP15366 [Anopheles gambiae str. PEST] 32 7.9
dbj|BAB67960.1| B1040D09.8 [Oryza sativa (japonica cultivar-group)] 32 7.9
>ref|NP_200119.1| putative protein; protein id: At5g53070.1 [Arabidopsis thaliana]
gi|8809596|dbj|BAA97147.1| contains similarity to
ribosomal protein L9~gene_id:MNB8.13 [Arabidopsis
thaliana] gi|27754507|gb|AAO22701.1| unknown protein
[Arabidopsis thaliana] gi|28393965|gb|AAO42390.1|
unknown protein [Arabidopsis thaliana]
Length = 221
Score = 97.1 bits (240), Expect = 2e-19
Identities = 45/78 (57%), Positives = 61/78 (77%)
Frame = -1
Query: 590 KAKARASKIEPLEIRLPVTKEVLVAEVARQLCVNIAPENLHLPSPLSTVGEYEVPLRLPR 411
K K R+SK + +++ P+TKE +V+EVARQLCV I P+N+ L +PL T GEYEVPL+ P+
Sbjct: 142 KFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKIDPDNVVLAAPLETFGEYEVPLKFPK 201
Query: 410 SIPLPEGKVNWSLQVKVR 357
+IPLP+G V W L+VKVR
Sbjct: 202 TIPLPQGTVQWILKVKVR 219
>gb|ZP_00069198.1| hypothetical protein [Oenococcus oeni MCW]
gi|23038499|gb|ZP_00070638.1| hypothetical protein
[Oenococcus oeni MCW]
Length = 151
Score = 34.3 bits (77), Expect = 1.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = -1
Query: 539 VTKEVLVAEVARQLCVNIAPENLHLPSPLSTVGEYEVPLRL 417
VT + + ++A+Q + + L LP P+ T+G +EVP +L
Sbjct: 95 VTAKEIADQLAKQFNLTVDKRKLQLPQPIKTIGLHEVPAKL 135
>gb|AAC15831.1| articulin 4 [Pseudomicrothorax dubius]
Length = 545
Score = 32.3 bits (72), Expect = 4.6
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -1
Query: 560 PLEIRLPVTKEVLVAEVARQLCVNIAPENLHLPSPLSTVGEYEV--PLRLPRSIPLP 396
P+ I PV + V V + + + P+ H+P P+ Y+V P+ +P+++P+P
Sbjct: 356 PVPIGRPVPQPVQVPQPYQVIQPVAVPQPYHVPEPVPVAQPYQVPQPVPVPQAVPVP 412
>gb|EAA10093.1| agCP15366 [Anopheles gambiae str. PEST]
Length = 680
Score = 31.6 bits (70), Expect = 7.9
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Frame = -1
Query: 560 PLEIRLPVTKEVLVAEVARQLCVNIAPENLHLPSPLSTVGEYEVPL--------RLPRSI 405
P+E+++P E +V I + +H+P P + +VP+ +P+ +
Sbjct: 91 PVEVKVPYPVEKIVHVDKPYPVEKIVEKVVHVPKPYPVYKQVQVPVPVEVKVPYEVPKPV 150
Query: 404 PLP-EGKVNWSLQVKV 360
P P E KV + ++VKV
Sbjct: 151 PYPVEKKVPYPVEVKV 166
>dbj|BAB67960.1| B1040D09.8 [Oryza sativa (japonica cultivar-group)]
Length = 716
Score = 31.6 bits (70), Expect = 7.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -2
Query: 484 HLKTCIFHHHYLPWENMRFHCVYPGPSLCLRARLTGVCKLKSGVNNHKAL 335
H+++ H +P F C YPG ++ L RL GV + +NN + L
Sbjct: 527 HVRSVAMHRDIVP---RAFSCRYPGHAVALLKRLNGVLRNHPCLNNQRML 573
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,094,067
Number of Sequences: 1393205
Number of extensions: 10461912
Number of successful extensions: 21142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21121
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
