Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014833A_C01 KMC014833A_c01
(986 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O81361|RS8_PRUAR 40S ribosomal protein S8 gi|3264759|gb|AAC24... 394 e-108
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 gi|7440237|pir||T04... 387 e-106
sp|P49199|RS8_ORYSA 40S RIBOSOMAL PROTEIN S8 gi|7440236|pir||T04... 377 e-103
ref|NP_197529.1| putative protein; protein id: At5g20290.1, supp... 372 e-102
sp|Q9FIF3|RS8_ARATH 40S ribosomal protein S8 gi|9759245|dbj|BAB0... 366 e-100
>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 gi|3264759|gb|AAC24583.1| 40S ribosomal
protein S8 [Prunus armeniaca]
Length = 221
Score = 394 bits (1012), Expect = e-108
Identities = 196/217 (90%), Positives = 204/217 (93%), Gaps = 1/217 (0%)
Frame = +1
Query: 82 MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 261
MGISRDSMHKRRATGGK+K WRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 262 LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGV 441
LDTGNFSWGSE VTRKTRLLDVVYNASNNELVRTQTLVK AIVQVDAAPFKQWYLQHYGV
Sbjct: 61 LDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
Query: 442 EIGRKKKT-AAKKDSTEEGEAVAEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRLLA 618
EIGRKKKT AAKKD+ EEGEA E+ KKSNHV KLE RQ+ RTLD+HIEEQFGGG+LLA
Sbjct: 121 EIGRKKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLA 180
Query: 619 CISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGA 729
CISSRPGQCG+ADG ILEGKELEFYMKKLQ+KKGKGA
Sbjct: 181 CISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGA 217
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 gi|7440237|pir||T04088 ribosomal protein
S8 - maize gi|1498053|gb|AAB06330.1| ribosomal protein
S8
Length = 221
Score = 387 bits (995), Expect = e-106
Identities = 194/219 (88%), Positives = 203/219 (92%), Gaps = 3/219 (1%)
Frame = +1
Query: 82 MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 261
MGISRDSMHKRRATGGKQK WRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 262 LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGV 441
LDTGN+SWGSE VTRKTR+LDVVYNASNNELVRTQTLVK AIVQVDAAPFKQWYL HYGV
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 442 EIGRKKKT-AAKKDSTE--EGEAVAEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRL 612
+IGRKKKT AAKKD+ E E EA AE+TKKSNHV RKLE R++ RTLD HIEEQFG GRL
Sbjct: 121 DIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRL 180
Query: 613 LACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGA 729
LACISSRPGQCGRADGYILEGKELEFYMKKLQ+KKGK A
Sbjct: 181 LACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA 219
>sp|P49199|RS8_ORYSA 40S RIBOSOMAL PROTEIN S8 gi|7440236|pir||T04082 probable ribosomal
protein S8 - rice gi|968902|dbj|BAA07207.1| ribosomal
protein S8 [Oryza sativa (japonica cultivar-group)]
Length = 220
Score = 377 bits (969), Expect = e-103
Identities = 186/219 (84%), Positives = 197/219 (89%), Gaps = 2/219 (0%)
Frame = +1
Query: 82 MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 261
MGISRDSMHKRRATGGKQK WRKKRKYELGRQPANTKLSSNKTVRR+RVRGGNVKWRALR
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALR 60
Query: 262 LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGV 441
LDTGN+SWGSE VTRKTR+LDVVYNASNNELVRTQTLVK AIVQVDAAPFKQWYL HYGV
Sbjct: 61 LDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 442 EIGRKKKTAAKKDST--EEGEAVAEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRLL 615
+IGRKKK ++ EA E+ KKSNHV RKLE RQ+ RTLD+HIEEQFG GRLL
Sbjct: 121 DIGRKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLL 180
Query: 616 ACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 732
ACISSRPGQCGRADGYILEGKELEFYMKKLQ+KKGKGA+
Sbjct: 181 ACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAS 219
>ref|NP_197529.1| putative protein; protein id: At5g20290.1, supported by cDNA:
29997., supported by cDNA: gi_15293006, supported by
cDNA: gi_15450473, supported by cDNA: gi_16974464,
supported by cDNA: gi_20258878 [Arabidopsis thaliana]
gi|15293007|gb|AAK93614.1| unknown protein [Arabidopsis
thaliana] gi|15450474|gb|AAK96530.1| AT5g20290/F5O24_180
[Arabidopsis thaliana] gi|16974465|gb|AAL31236.1|
AT5g20290/F5O24_180 [Arabidopsis thaliana]
gi|20258879|gb|AAM14111.1| unknown protein [Arabidopsis
thaliana] gi|21592577|gb|AAM64526.1| 40S ribosomal
protein S8-like [Arabidopsis thaliana]
Length = 222
Score = 372 bits (954), Expect = e-102
Identities = 186/223 (83%), Positives = 202/223 (90%), Gaps = 6/223 (2%)
Frame = +1
Query: 82 MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 261
MGISRDS+HKRRATGGKQK WRKKRKYE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 262 LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGV 441
LDTGN+SWGSE TRKTR+LDVVYNASNNELVRT+TLVK AIVQVDAAPFKQWYL HYGV
Sbjct: 61 LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120
Query: 442 EIGRKKKTAA--KKDSTEEGE----AVAEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGG 603
E+GRKKK+A+ KKD EEGE A E+ KKSNH+ RK+ +RQ+ R+LDSHIE+QF
Sbjct: 121 ELGRKKKSASSTKKDG-EEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFAS 179
Query: 604 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 732
GRLLACISSRPGQCGRADGYILEGKELEFYMKK+QKKKGKGAA
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGAA 222
>sp|Q9FIF3|RS8_ARATH 40S ribosomal protein S8 gi|9759245|dbj|BAB09769.1| 40S ribosomal
protein S8 [Arabidopsis thaliana]
gi|28416637|gb|AAO42849.1| At5g59240 [Arabidopsis
thaliana]
Length = 210
Score = 366 bits (939), Expect = e-100
Identities = 186/217 (85%), Positives = 193/217 (88%), Gaps = 1/217 (0%)
Frame = +1
Query: 82 MGISRDSMHKRRATGGKQKTWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 261
MGISRDS+HKRRATGGKQK WRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR
Sbjct: 1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60
Query: 262 LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKGAIVQVDAAPFKQWYLQHYGV 441
LDTGNFSWGSE VTRKTR+LDV YNASNNELVRTQTLVK AIVQVDAAPFKQ YLQHYGV
Sbjct: 61 LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120
Query: 442 EIGRKKKTAAKKDSTEEGEAV-AEDTKKSNHVQRKLENRQKDRTLDSHIEEQFGGGRLLA 618
+IGRKKK GEAV E+ KKSNHVQRKLE RQ+ R LDSH+EEQF GRLLA
Sbjct: 121 DIGRKKK----------GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLA 170
Query: 619 CISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGA 729
CI+SRPGQCGRADGYILEGKELEFYMKKLQKKKGK A
Sbjct: 171 CIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNA 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 858,430,153
Number of Sequences: 1393205
Number of extensions: 20051782
Number of successful extensions: 69654
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 60007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68344
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56851631560
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
