Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014817A_C01 KMC014817A_c01
(475 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD21827.1| maturase K [Clematis afoliata] 36 0.18
ref|NP_294069.1| cytochrome c-type biogenesis protein CcmF [Dein... 36 0.24
gb|AAM62991.1| unknown [Arabidopsis thaliana] 34 0.69
ref|NP_565256.1| expressed protein; protein id: At2g01190.1, sup... 34 0.69
pir||F84421 hypothetical protein At2g01190 [imported] - Arabidop... 34 0.69
>emb|CAD21827.1| maturase K [Clematis afoliata]
Length = 293
Score = 36.2 bits (82), Expect = 0.18
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 107 VNDNHSFFIIYHKHTYHKQARPRT**LTTEQ**GDQTHFFKIVSPSILFFT----SILFF 274
V ++ S F++ K +YH ++ T+ + D+THF++ + ++ F +IL+
Sbjct: 81 VYESESIFVVLRKQSYHLRS-------TSSRAFLDRTHFYRKIEHFLVDFRNDFHTILWL 133
Query: 275 FRDCYIMAVKFLPGSSTLRSKG 340
F+D +I +F G S L SKG
Sbjct: 134 FKDPFIQYFRF-QGKSILSSKG 154
>ref|NP_294069.1| cytochrome c-type biogenesis protein CcmF [Deinococcus radiodurans]
gi|7471780|pir||B75532 cytochrome c-type biogenesis
protein CcmF - Deinococcus radiodurans (strain R1)
gi|6458021|gb|AAF09926.1|AE001894_10 cytochrome c-type
biogenesis protein CcmF [Deinococcus radiodurans]
Length = 664
Score = 35.8 bits (81), Expect = 0.24
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Frame = +1
Query: 205 RGPNPFLQN--CFSLHPFLHFYPF--LFQRLLYNGCEVLTWQLHVA--VQRKKLSRIIWQ 366
RGPNP LQN ++HP L + F L Y ++T +L + VQ ++ + + W
Sbjct: 166 RGPNPLLQNHWMMAVHPVLMYLGFVGLSVPFAYAVAAMITGRLGESWLVQTRRWTLVAWG 225
Query: 367 QAS--------WSVSVLGWG 402
S WS +LGWG
Sbjct: 226 FLSAAIVAGGWWSYEILGWG 245
>gb|AAM62991.1| unknown [Arabidopsis thaliana]
Length = 720
Score = 34.3 bits (77), Expect = 0.69
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Frame = -2
Query: 465 NYVYDFADPAYAQMLYTQPLAPPSQHTNR---P*CLLPDDSAQLLPLDRNVELPGKNFT 298
NY Y++ D A+ Q+ YTQP+ T P ++PD SA +LP +N T
Sbjct: 660 NYGYEYVDNAHTQIYYTQPMGHAQYQTMTGPPPAMVMPDGSAA-------AKLPAENMT 711
>ref|NP_565256.1| expressed protein; protein id: At2g01190.1, supported by cDNA:
17996., supported by cDNA: gi_17979118 [Arabidopsis
thaliana] gi|17979119|gb|AAL49817.1| unknown protein
[Arabidopsis thaliana] gi|20197587|gb|AAD14519.2|
expressed protein [Arabidopsis thaliana]
gi|21436179|gb|AAM51377.1| unknown protein [Arabidopsis
thaliana]
Length = 720
Score = 34.3 bits (77), Expect = 0.69
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Frame = -2
Query: 465 NYVYDFADPAYAQMLYTQPLAPPSQHTNR---P*CLLPDDSAQLLPLDRNVELPGKNFT 298
NY Y++ D A+ Q+ YTQP+ T P ++PD SA +LP +N T
Sbjct: 660 NYGYEYVDNAHTQIYYTQPMGHAQYQTMTGPPPAMVMPDGSAA-------AKLPAENMT 711
>pir||F84421 hypothetical protein At2g01190 [imported] - Arabidopsis thaliana
Length = 452
Score = 34.3 bits (77), Expect = 0.69
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Frame = -2
Query: 465 NYVYDFADPAYAQMLYTQPLAPPSQHTNR---P*CLLPDDSAQLLPLDRNVELPGKNFT 298
NY Y++ D A+ Q+ YTQP+ T P ++PD SA +LP +N T
Sbjct: 392 NYGYEYVDNAHTQIYYTQPMGHAQYQTMTGPPPAMVMPDGSAA-------AKLPAENMT 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,430,807
Number of Sequences: 1393205
Number of extensions: 8767415
Number of successful extensions: 26740
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26684
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
