Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014808A_C01 KMC014808A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190926.1| diaminopimelate epimerase - like protein; prote... 184 4e-46
sp|Q8YVD0|DAP2_ANASP Diaminopimelate epimerase 2 (DAP epimerase 2) 148 4e-35
ref|ZP_00073151.1| hypothetical protein [Trichodesmium erythraeu... 148 5e-35
ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PC... 147 6e-35
gb|ZP_00112068.1| hypothetical protein [Nostoc punctiforme] 147 8e-35
>ref|NP_190926.1| diaminopimelate epimerase - like protein; protein id: At3g53580.1
[Arabidopsis thaliana] gi|11272982|pir||T45898
diaminopimelate epimerase-like protein - Arabidopsis
thaliana gi|6729509|emb|CAB67665.1| diaminopimelate
epimerase-like protein [Arabidopsis thaliana]
gi|22022530|gb|AAM83223.1| AT3g53580/F4P12_280
[Arabidopsis thaliana] gi|23505901|gb|AAN28810.1|
At3g53580/F4P12_280 [Arabidopsis thaliana]
Length = 362
Score = 184 bits (468), Expect = 4e-46
Identities = 95/173 (54%), Positives = 124/173 (70%), Gaps = 6/173 (3%)
Frame = +3
Query: 36 MAITATISVP-----VSTPIHRSLPAVNLFRSSSSFAPPQRTFNYLNSRLVASSMSTEAP 200
+A +T+SV VS R+L +V SS SF ++ + + + L S+ ++
Sbjct: 3 IAAVSTVSVAPQSRRVSNAFSRNLGSV----SSLSFGFFEKEYCFKSPSLRVSAAASMDA 58
Query: 201 VKTTSSSAASSLNSG-SGFLHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGV 377
V S AS L+ +G LHF KYHGLGNDF+L+DNRDSSEPKI+ E+A ++CDRNFGV
Sbjct: 59 VTAEKFSPASFLDKKETGVLHFVKYHGLGNDFILVDNRDSSEPKITQEQAAKLCDRNFGV 118
Query: 378 GADGVIFLLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFISQVENIHGRH 536
GADGVIF +PG+NGTDY MRIFNSDGSEPEMCGNGVRCFA+FI+++EN+ G+H
Sbjct: 119 GADGVIFAMPGVNGTDYAMRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKH 171
>sp|Q8YVD0|DAP2_ANASP Diaminopimelate epimerase 2 (DAP epimerase 2)
Length = 279
Score = 148 bits (374), Expect = 4e-35
Identities = 65/90 (72%), Positives = 77/90 (85%)
Frame = +3
Query: 255 LHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFLLPGINGTDYTM 434
+ F KYHGLGNDF+LIDNR S P I+ EKAV++CDR+FG+GADGVIF LPG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRASKTPAITPEKAVEMCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 435 RIFNSDGSEPEMCGNGVRCFAKFISQVENI 524
RIFNSDGSEPEMCGNG+RC A F++ +E +
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAAFLADLEGL 92
>ref|ZP_00073151.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 278
Score = 148 bits (373), Expect = 5e-35
Identities = 63/87 (72%), Positives = 77/87 (88%)
Frame = +3
Query: 261 FAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFLLPGINGTDYTMRI 440
F KYHGLGNDF+LIDNR +P ++ E+A+++CDRNFG+GADGVIF LPG+ TDYTMRI
Sbjct: 5 FTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRI 64
Query: 441 FNSDGSEPEMCGNGVRCFAKFISQVEN 521
FNSDGSEPEMCGNG+RC AKFI+++EN
Sbjct: 65 FNSDGSEPEMCGNGIRCLAKFIAELEN 91
>ref|NP_442973.1| diaminopimelate epimerase [Synechocystis sp. PCC 6803]
gi|2494041|sp|P74667|DAPF_SYNY3 Diaminopimelate
epimerase (DAP epimerase) gi|7438178|pir||S76873
hypothetical protein - Synechocystis sp. (strain PCC
6803) gi|1653875|dbj|BAA18785.1| diaminopimelate
epimerase [Synechocystis sp. PCC 6803]
Length = 279
Score = 147 bits (372), Expect = 6e-35
Identities = 63/90 (70%), Positives = 79/90 (87%)
Frame = +3
Query: 255 LHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFLLPGINGTDYTM 434
L F+KYHGLGNDF+L+DNR S+EP ++ ++A Q+CDR+FG+GADGVIF LPG GTDYTM
Sbjct: 3 LSFSKYHGLGNDFILVDNRQSTEPCLTPDQAQQLCDRHFGIGADGVIFALPGQGGTDYTM 62
Query: 435 RIFNSDGSEPEMCGNGVRCFAKFISQVENI 524
RIFNSDGSEPEMCGNG+RC AKF++ +E +
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAKFLADLEGV 92
>gb|ZP_00112068.1| hypothetical protein [Nostoc punctiforme]
Length = 279
Score = 147 bits (371), Expect = 8e-35
Identities = 64/88 (72%), Positives = 77/88 (86%)
Frame = +3
Query: 255 LHFAKYHGLGNDFVLIDNRDSSEPKISSEKAVQICDRNFGVGADGVIFLLPGINGTDYTM 434
+ F KYHGLGNDF+LIDNR SS P ++ E+A+Q+CDR+FG+GADGVIF LPG NGTDYTM
Sbjct: 3 IEFTKYHGLGNDFILIDNRSSSLPVLTPEQAIQLCDRHFGIGADGVIFALPGENGTDYTM 62
Query: 435 RIFNSDGSEPEMCGNGVRCFAKFISQVE 518
RIFNSDGSEPEMCGNG+RC A F++ +E
Sbjct: 63 RIFNSDGSEPEMCGNGIRCLAGFLADLE 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,430,540
Number of Sequences: 1393205
Number of extensions: 12453087
Number of successful extensions: 122233
Number of sequences better than 10.0: 769
Number of HSP's better than 10.0 without gapping: 61424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100427
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
