Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014783A_C01 KMC014783A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA10125.1| 40S ribosomal protein S19 [Cicer arietinum] 199 3e-50
ref|NP_186857.1| putative 40S ribosomal protein S19; protein id:... 184 7e-46
ref|NP_200925.1| 40S ribsomal protein S19 - like; protein id: At... 180 1e-44
ref|NP_197056.1| 40S RIBOSOMAL PROTEIN S19 - like; protein id: A... 180 1e-44
sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19 170 1e-41
>emb|CAA10125.1| 40S ribosomal protein S19 [Cicer arietinum]
Length = 105
Score = 199 bits (505), Expect = 3e-50
Identities = 96/102 (94%), Positives = 100/102 (97%)
Frame = -3
Query: 564 RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIA 385
RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSG+IA
Sbjct: 4 RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIA 63
Query: 384 RNILQQLQEMNIIEMDTQGGRRITSSGRRDLDPVAGRIVVAP 259
R+ILQQLQ MNIIEMDT+GGR+ITSSGRRDLD VAGRIVVAP
Sbjct: 64 RHILQQLQNMNIIEMDTKGGRKITSSGRRDLDQVAGRIVVAP 105
>ref|NP_186857.1| putative 40S ribosomal protein S19; protein id: At3g02080.1,
supported by cDNA: 41619., supported by cDNA:
gi_13878028, supported by cDNA: gi_17104594 [Arabidopsis
thaliana] gi|27923843|sp|Q9SGA6|R191_ARATH 40S ribosomal
protein S19-1 gi|6513924|gb|AAF14828.1|AC011664_10
putative 40S ribosomal protein S19 [Arabidopsis
thaliana] gi|13878029|gb|AAK44092.1|AF370277_1 putative
40S ribosomal protein S19 [Arabidopsis thaliana]
gi|17104595|gb|AAL34186.1| putative 40S ribosomal
protein S19 [Arabidopsis thaliana]
gi|21593712|gb|AAM65679.1| putative 40S ribosomal
protein S19 [Arabidopsis thaliana]
Length = 143
Score = 184 bits (467), Expect = 7e-46
Identities = 85/102 (83%), Positives = 96/102 (93%)
Frame = -3
Query: 564 RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIA 385
+ KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG IA
Sbjct: 42 KLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIA 101
Query: 384 RNILQQLQEMNIIEMDTQGGRRITSSGRRDLDPVAGRIVVAP 259
R+ILQQL+ MNI+E+DT+GGRRITSSG+RDLD VAGRI V P
Sbjct: 102 RHILQQLETMNIVELDTKGGRRITSSGQRDLDQVAGRIAVEP 143
>ref|NP_200925.1| 40S ribsomal protein S19 - like; protein id: At5g61170.1
[Arabidopsis thaliana] gi|27923837|sp|Q9FNP8|R193_ARATH
40S ribosomal protein S19-3 gi|9759463|dbj|BAB10379.1|
40S ribosomal protein S19 [Arabidopsis thaliana]
Length = 143
Score = 180 bits (457), Expect = 1e-44
Identities = 82/101 (81%), Positives = 95/101 (93%)
Frame = -3
Query: 564 RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIA 385
+ KELAPYDPDWYY+RAASMARK+YLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG +A
Sbjct: 42 KLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVA 101
Query: 384 RNILQQLQEMNIIEMDTQGGRRITSSGRRDLDPVAGRIVVA 262
R+ILQQLQ MNI+++DT+GGR+ITSSG+RDLD VAGRI A
Sbjct: 102 RHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQVAGRIAAA 142
>ref|NP_197056.1| 40S RIBOSOMAL PROTEIN S19 - like; protein id: At5g15520.1,
supported by cDNA: 255203. [Arabidopsis thaliana]
gi|27923841|sp|Q9LF30|R192_ARATH 40S ribosomal protein
S19-2 gi|11276633|pir||T51530 40S RIBOSOMAL PROTEIN
S19-like - Arabidopsis thaliana
gi|9755807|emb|CAC01751.1| 40S RIBOSOMAL PROTEIN
S19-like [Arabidopsis thaliana]
gi|21554401|gb|AAM63506.1| 40S ribosomal protein
S19-like [Arabidopsis thaliana]
gi|28466827|gb|AAO44022.1| At5g15520 [Arabidopsis
thaliana]
Length = 143
Score = 180 bits (456), Expect = 1e-44
Identities = 84/98 (85%), Positives = 94/98 (95%)
Frame = -3
Query: 564 RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIA 385
R KELAPYDPDWYY+RAASMARKIYLRGGLGVGAF+RIYGGS+RNGSRPPHFCKSSG IA
Sbjct: 42 RLKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIA 101
Query: 384 RNILQQLQEMNIIEMDTQGGRRITSSGRRDLDPVAGRI 271
R+ILQQL+ M+I+E+DT+GGRRITSSG+RDLD VAGRI
Sbjct: 102 RHILQQLETMSIVELDTKGGRRITSSGQRDLDQVAGRI 139
>sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19
Length = 146
Score = 170 bits (430), Expect = 1e-41
Identities = 80/100 (80%), Positives = 89/100 (89%)
Frame = -3
Query: 564 RFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIA 385
RFKEL PYDPDWYY RAAS+ARKIYLR G+GVG FQ+IYGG QRNGSRPPHFCKSSGAI+
Sbjct: 44 RFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAIS 103
Query: 384 RNILQQLQEMNIIEMDTQGGRRITSSGRRDLDPVAGRIVV 265
RNILQQLQ+M II++D +GGR ITS GRRDLD VAGR+ V
Sbjct: 104 RNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDV 143
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,970,928
Number of Sequences: 1393205
Number of extensions: 11997712
Number of successful extensions: 32960
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 31629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32873
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
