Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014776A_C01 KMC014776A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL77102.1|AF472608_1 carbohydrate oxidase [Lactuca sativa] 176 2e-43
gb|AAL77103.1|AF472609_1 carbohydrate oxidase [Helianthus annuus] 173 1e-42
ref|NP_174357.1| FAD-linked oxidoreductase family; protein id: A... 169 2e-41
ref|NP_193815.1| FAD-linked oxidoreductase family; protein id: A... 159 2e-38
ref|NP_174358.1| FAD-linked oxidoreductase family; protein id: A... 159 2e-38
>gb|AAL77102.1|AF472608_1 carbohydrate oxidase [Lactuca sativa]
Length = 540
Score = 176 bits (445), Expect = 2e-43
Identities = 79/125 (63%), Positives = 99/125 (79%), Gaps = 1/125 (0%)
Frame = -1
Query: 579 PYGGRMAEIPSTASPFPHRAGNLWKIQYQANWMQSGKEVADHYINLTRKLHDYMTPFVSM 400
PYGGRM+EI A PFPHR+GN+ KIQY+ NW + G E A+ Y+N TR ++DYMTPFVS
Sbjct: 411 PYGGRMSEISEFAKPFPHRSGNIAKIQYEVNWDELGVEAANRYLNFTRVMYDYMTPFVSK 470
Query: 399 NPREAFFNYKDLDLGIHHQGKKSYSKGRVYGVEYFKD-NFDRLVQVKSKVDPGNFFRNEQ 223
NPREAF NY+DLD+G++ GK +Y +G VYG +YFK+ N+ RL VK++VDP NFFRNEQ
Sbjct: 471 NPREAFLNYRDLDIGVNSHGKNAYGEGMVYGHKYFKETNYKRLTMVKTRVDPSNFFRNEQ 530
Query: 222 SIPTL 208
SIPTL
Sbjct: 531 SIPTL 535
>gb|AAL77103.1|AF472609_1 carbohydrate oxidase [Helianthus annuus]
Length = 538
Score = 173 bits (439), Expect = 1e-42
Identities = 79/125 (63%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Frame = -1
Query: 579 PYGGRMAEIPSTASPFPHRAGNLWKIQYQANWMQSGKEVADHYINLTRKLHDYMTPFVSM 400
PYGGRM+EI A PFPHR+GN+ KIQY+ NW E + Y+N TR ++DYMTPFVS
Sbjct: 412 PYGGRMSEISEFAKPFPHRSGNIAKIQYEVNWEDLSDEAENRYLNFTRLMYDYMTPFVSK 471
Query: 399 NPREAFFNYKDLDLGIHHQGKKSYSKGRVYGVEYFKD-NFDRLVQVKSKVDPGNFFRNEQ 223
NPREAF NY+DLD+GI+ G+ +Y++G VYG +YFK+ N+ RLV VK+KVDP NFFRNEQ
Sbjct: 472 NPREAFLNYRDLDIGINSHGRNAYTEGMVYGHKYFKETNYKRLVSVKTKVDPDNFFRNEQ 531
Query: 222 SIPTL 208
SIPTL
Sbjct: 532 SIPTL 536
>ref|NP_174357.1| FAD-linked oxidoreductase family; protein id: At1g30700.1,
supported by cDNA: gi_16930506 [Arabidopsis thaliana]
gi|25345676|pir||E86432 T5I8.15 protein - Arabidopsis
thaliana gi|4587526|gb|AAD25757.1|AC007060_15 Strong
similarity to F19I3.2 gi|3033375 putative berberine
bridge enzyme from Arabidopsis thaliana BAC gb|AC004238.
ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this
gene gi|16930507|gb|AAL31939.1|AF419607_1
At1g30700/T5I8_15 [Arabidopsis thaliana]
gi|22655260|gb|AAM98220.1| putative reticuline
oxidase-like protein [Arabidopsis thaliana]
Length = 527
Score = 169 bits (429), Expect = 2e-41
Identities = 80/127 (62%), Positives = 100/127 (77%), Gaps = 2/127 (1%)
Frame = -1
Query: 579 PYGGRMAEIPSTASPFPHRAGNLWKIQYQANWMQSGKEVADHYINLTRKLHDYMTPFVSM 400
PYGG M I ST +PFP+RAGNLWKIQY ANW + + D Y+ LTRKL+ +MTPFVS
Sbjct: 403 PYGGEMGRISSTVTPFPYRAGNLWKIQYGANWRD--ETLTDRYMELTRKLYQFMTPFVSK 460
Query: 399 NPREAFFNYKDLDLGIH-HQGK-KSYSKGRVYGVEYFKDNFDRLVQVKSKVDPGNFFRNE 226
NPR++FFNY+D+DLGI+ H GK SY +G+ YG +YF NF+RLV++K++VD GNFFRNE
Sbjct: 461 NPRQSFFNYRDVDLGINSHNGKISSYVEGKRYGKKYFAGNFERLVKIKTRVDSGNFFRNE 520
Query: 225 QSIPTLP 205
QSIP LP
Sbjct: 521 QSIPVLP 527
>ref|NP_193815.1| FAD-linked oxidoreductase family; protein id: At4g20830.1,
supported by cDNA: gi_15983492 [Arabidopsis thaliana]
gi|7488295|pir||T10625 reticuline oxidase homolog
F21C20.180 - Arabidopsis thaliana
gi|5262223|emb|CAB45849.1| reticuline oxidase-like
protein [Arabidopsis thaliana]
gi|7268879|emb|CAB79083.1| reticuline oxidase-like
protein [Arabidopsis thaliana]
gi|15983493|gb|AAL11614.1|AF424621_1
AT4g20830/F21C20_180 [Arabidopsis thaliana]
gi|17065038|gb|AAL32673.1| Unknown protein [Arabidopsis
thaliana] gi|22137036|gb|AAM91363.1|
At4g20830/F21C20_180 [Arabidopsis thaliana]
Length = 540
Score = 159 bits (402), Expect = 2e-38
Identities = 70/124 (56%), Positives = 93/124 (74%)
Frame = -1
Query: 579 PYGGRMAEIPSTASPFPHRAGNLWKIQYQANWMQSGKEVADHYINLTRKLHDYMTPFVSM 400
PYGG+MAE+ A PFPHR L+KIQY NW ++ E+ Y+N + L+ +MT FVS
Sbjct: 414 PYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAEIEKGYLNQAKVLYSFMTGFVSK 472
Query: 399 NPREAFFNYKDLDLGIHHQGKKSYSKGRVYGVEYFKDNFDRLVQVKSKVDPGNFFRNEQS 220
NPR ++FNY+D+D+G++ G SY +G VYG +YF +NFDRLV++K+ VDPGNFFRNEQS
Sbjct: 473 NPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGENFDRLVKIKTAVDPGNFFRNEQS 532
Query: 219 IPTL 208
IPTL
Sbjct: 533 IPTL 536
>ref|NP_174358.1| FAD-linked oxidoreductase family; protein id: At1g30710.1
[Arabidopsis thaliana] gi|25345668|pir||F86432 T5I8.16
protein - Arabidopsis thaliana
gi|4587527|gb|AAD25758.1|AC007060_16 Strong similarity
to F19I3.2 gi|3033375 putative berberine bridge enzyme
from Arabidopsis thaliana BAC gb|AC004238
Length = 531
Score = 159 bits (402), Expect = 2e-38
Identities = 73/124 (58%), Positives = 96/124 (76%)
Frame = -1
Query: 579 PYGGRMAEIPSTASPFPHRAGNLWKIQYQANWMQSGKEVADHYINLTRKLHDYMTPFVSM 400
PYGGRM+EIPST + FPHRAGN++KIQY ANW G+ VA ++ T +L + M+P+VS
Sbjct: 407 PYGGRMSEIPSTETAFPHRAGNMFKIQYAANWFVPGEAVAKDCLSQTERLFEAMSPYVSK 466
Query: 399 NPREAFFNYKDLDLGIHHQGKKSYSKGRVYGVEYFKDNFDRLVQVKSKVDPGNFFRNEQS 220
NPREAF NY+D+D+G +Y +G+VYG +YFKDNF++LV++KS+VDP NFFR EQS
Sbjct: 467 NPREAFLNYRDVDIG--KSLNSTYEEGKVYGFKYFKDNFEKLVKIKSRVDPDNFFRYEQS 524
Query: 219 IPTL 208
IP L
Sbjct: 525 IPVL 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,667,788
Number of Sequences: 1393205
Number of extensions: 10792111
Number of successful extensions: 24555
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 23763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24489
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
