Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014764A_C01 KMC014764A_c01
(443 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567941.1| putative protein; protein id: At4g33910.1, supp... 120 4e-27
gb|AAK63935.1|AC084282_16 putative dioxygenase [Oryza sativa (ja... 119 8e-27
gb|AAO42145.1| putative prolyl 4-hydroxylase [Arabidopsis thaliana] 75 1e-13
gb|AAO72374.1| putative oxidoreductase [Oryza sativa (japonica c... 75 1e-13
dbj|BAB02865.1| gb|AAF08583.1~gene_id:MFJ20.18~similar to unknow... 75 1e-13
>ref|NP_567941.1| putative protein; protein id: At4g33910.1, supported by cDNA:
2306., supported by cDNA: gi_17381225, supported by
cDNA: gi_20465826 [Arabidopsis thaliana]
gi|17381226|gb|AAL36425.1| unknown protein [Arabidopsis
thaliana] gi|20465827|gb|AAM20018.1| unknown protein
[Arabidopsis thaliana] gi|21592377|gb|AAM64328.1|
putative dioxygenase [Arabidopsis thaliana]
Length = 288
Score = 120 bits (301), Expect = 4e-27
Identities = 52/68 (76%), Positives = 59/68 (86%)
Frame = -3
Query: 441 ENGLNMDVSYRYEDCIGLRVRPRQGDGLLFYSLFPNGTIDPTSLHGSCPVIKGEKWVAPK 262
ENG NM + Y Y+ CIGL+V+PR+GDGLLFYS+FPNGTID TSLHGSCPV KGEKWVA K
Sbjct: 220 ENGSNMGIGYDYKQCIGLKVKPRKGDGLLFYSVFPNGTIDQTSLHGSCPVTKGEKWVATK 279
Query: 261 WIRDHDQD 238
WIRD DQ+
Sbjct: 280 WIRDQDQE 287
>gb|AAK63935.1|AC084282_16 putative dioxygenase [Oryza sativa (japonica cultivar-group)]
gi|17027263|gb|AAL34117.1|AC090713_4 putative
hydroxylase subunit [Oryza sativa (japonica
cultivar-group)]
Length = 310
Score = 119 bits (298), Expect = 8e-27
Identities = 53/64 (82%), Positives = 57/64 (88%)
Frame = -3
Query: 441 ENGLNMDVSYRYEDCIGLRVRPRQGDGLLFYSLFPNGTIDPTSLHGSCPVIKGEKWVAPK 262
ENG NMD+ Y YE CIGL+V+PR+GDGLLFYSL NGTIDPTSLHGSCPVIKGEKWVA K
Sbjct: 242 ENGENMDIGYDYEKCIGLKVKPRKGDGLLFYSLMVNGTIDPTSLHGSCPVIKGEKWVATK 301
Query: 261 WIRD 250
WIRD
Sbjct: 302 WIRD 305
>gb|AAO42145.1| putative prolyl 4-hydroxylase [Arabidopsis thaliana]
Length = 253
Score = 75.5 bits (184), Expect = 1e-13
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 15/82 (18%)
Frame = -3
Query: 393 GLRVRPRQGDGLLFYSLFPNGTIDPTSLHGSCPVIKGEKWVAPKWIR------------- 253
G V+PR+GD LLF++L NGT DP SLHGSCPVI+GEKW A +WI
Sbjct: 156 GYAVKPRKGDALLFFNLHLNGTTDPNSLHGSCPVIEGEKWSATRWIHVRSFGKKKLVCVD 215
Query: 252 DHD--QDY*IIGSCNQHFVYLI 193
DH+ Q++ G C ++ +Y++
Sbjct: 216 DHESCQEWADAGECEKNPMYMV 237
>gb|AAO72374.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)]
Length = 299
Score = 75.5 bits (184), Expect = 1e-13
Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = -3
Query: 408 YEDCI--GLRVRPRQGDGLLFYSLFPNGTIDPTSLHGSCPVIKGEKWVAPKWI 256
+ DC GL V+P++GD LLF+SL N T DP SLHGSCPVI+GEKW A KWI
Sbjct: 188 WSDCARSGLAVKPKKGDALLFFSLHVNATTDPASLHGSCPVIEGEKWSATKWI 240
>dbj|BAB02865.1| gb|AAF08583.1~gene_id:MFJ20.18~similar to unknown protein
[Arabidopsis thaliana]
Length = 328
Score = 75.5 bits (184), Expect = 1e-13
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 15/82 (18%)
Frame = -3
Query: 393 GLRVRPRQGDGLLFYSLFPNGTIDPTSLHGSCPVIKGEKWVAPKWIR------------- 253
G V+PR+GD LLF++L NGT DP SLHGSCPVI+GEKW A +WI
Sbjct: 124 GYAVKPRKGDALLFFNLHLNGTTDPNSLHGSCPVIEGEKWSATRWIHVRSFGKKKLVCVD 183
Query: 252 DHD--QDY*IIGSCNQHFVYLI 193
DH+ Q++ G C ++ +Y++
Sbjct: 184 DHESCQEWADAGECEKNPMYMV 205
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,272,146
Number of Sequences: 1393205
Number of extensions: 8397617
Number of successful extensions: 15923
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 15615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15917
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
