Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014760A_C01 KMC014760A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA85437.1| Similar to Sequence of BAC F7G19 from Arabidopsi... 182 3e-45
ref|NP_187168.1| unknown protein; protein id: At3g05170.1 [Arabi... 126 3e-28
ref|NP_172369.1| unknown protein; protein id: At1g08940.1 [Arabi... 104 1e-21
gb|AAM22016.1|AC093178_11 Hypothetical protein [Oryza sativa (ja... 83 3e-15
ref|NP_629932.1| conserved hypothetical protein SC4H2.29 [Strept... 69 4e-11
>dbj|BAA85437.1| Similar to Sequence of BAC F7G19 from Arabidopsis thaliana
chromosome 1; similar to Saccharomyces hypothetical
protein YDR051c (AC000106) [Oryza sativa (japonica
cultivar-group)] gi|25553532|dbj|BAC24808.1|
OSJNBa0004I20.3 [Oryza sativa (japonica cultivar-group)]
Length = 450
Score = 182 bits (462), Expect = 3e-45
Identities = 89/129 (68%), Positives = 103/129 (78%), Gaps = 2/129 (1%)
Frame = -3
Query: 619 VYDRITGFRETLRADINIGRYQPPGEEKMDINLVIVSHGLTLRVFLMRWYKWTVEQFEGL 440
VYDRITGFRETLRADI+IGR+QPPGE D+N+V+VSHGLTLRVFLMRWYKWTV QFEGL
Sbjct: 298 VYDRITGFRETLRADIDIGRFQPPGERNPDMNVVLVSHGLTLRVFLMRWYKWTVSQFEGL 357
Query: 439 HNLRNAEMLVMEKGYGGRYSLLMHHDEQELRRFGLTDEMLIEQEWHKHARPADLNYDCPM 260
NL N LVM+ G GGRYSLL+HH ELR FGLTD+M+ +Q+W ARP +LNY+ +
Sbjct: 358 ANLSNGGALVMQTGAGGRYSLLVHHSVDELREFGLTDDMIEDQKWQMTARPGELNYNF-I 416
Query: 259 VN--SFFPH 239
N SFF H
Sbjct: 417 TNGPSFFTH 425
>ref|NP_187168.1| unknown protein; protein id: At3g05170.1 [Arabidopsis thaliana]
gi|6729027|gb|AAF27023.1|AC009177_13 unknown protein
[Arabidopsis thaliana]
Length = 316
Score = 126 bits (316), Expect = 3e-28
Identities = 64/130 (49%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Frame = -3
Query: 619 VYDRITGFRETLRADINIGRYQ-PPGEEKMDINLVIVSHGLTLRVFLMRWYKWTVEQFEG 443
V+DR++ F E+L DI++ R P E +N VIVSHGLT RVFLM+W+KW+VEQFEG
Sbjct: 144 VFDRVSSFLESLWRDIDMNRLHINPSHE---LNFVIVSHGLTSRVFLMKWFKWSVEQFEG 200
Query: 442 LHNLRNAEMLVMEKGYGGRYSLLMHHDEQELRRFGLTDEMLIEQEWHKHARPADLNYDCP 263
L+N N+E+ VME G GG YSL +HH E+EL +GL+ EM+ +Q+W +A + DC
Sbjct: 201 LNNPGNSEIRVMELGQGGDYSLAIHHTEEELATWGLSPEMIADQKWRANAHKGEWKEDCK 260
Query: 262 -MVNSFFPHL 236
FF H+
Sbjct: 261 WYFGDFFDHM 270
>ref|NP_172369.1| unknown protein; protein id: At1g08940.1 [Arabidopsis thaliana]
gi|25407069|pir||C86221 hypothetical protein [imported]
- Arabidopsis thaliana gi|2342686|gb|AAB70412.1| Similar
to Saccharomyces hypothetical protein YDR051c
(gb|Z49209). ESTs gb|T44436,gb|42252 come from this
gene. [Arabidopsis thaliana]
Length = 281
Score = 104 bits (259), Expect = 1e-21
Identities = 47/104 (45%), Positives = 73/104 (70%)
Frame = -3
Query: 619 VYDRITGFRETLRADINIGRYQPPGEEKMDINLVIVSHGLTLRVFLMRWYKWTVEQFEGL 440
VYDR++ F E++ D+++ R+Q + ++NLVIVSHGLT RVFL +W+KWTV +FE L
Sbjct: 147 VYDRVSSFLESMWRDVDMNRHQV--DPSSELNLVIVSHGLTSRVFLTKWFKWTVAEFERL 204
Query: 439 HNLRNAEMLVMEKGYGGRYSLLMHHDEQELRRFGLTDEMLIEQE 308
+N N E VME G G Y+ +HH E+E+ +G++ +M+ +Q+
Sbjct: 205 NNFGNCEFRVMELGASGEYTFAIHHSEEEMLDWGMSKDMIDDQK 248
>gb|AAM22016.1|AC093178_11 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/59 (64%), Positives = 45/59 (75%)
Frame = -3
Query: 481 MRWYKWTVEQFEGLHNLRNAEMLVMEKGYGGRYSLLMHHDEQELRRFGLTDEMLIEQEW 305
MRWYKW V QFEGL NL N LVM+ G GGRYSLL+HH +ELR FGLTD+M+ +Q +
Sbjct: 116 MRWYKWIVTQFEGLANLSNDGALVMQTGAGGRYSLLVHHSVEELRVFGLTDDMIEDQRF 174
>ref|NP_629932.1| conserved hypothetical protein SC4H2.29 [Streptomyces coelicolor
A3(2)] gi|7479557|pir||T35128 hypothetical protein
SC4H2.29 SC4H2.29 - Streptomyces coelicolor
gi|2995316|emb|CAA18344.1| conserved hypothetical
protein SC4H2.29 [Streptomyces coelicolor A3(2)]
Length = 219
Score = 69.3 bits (168), Expect = 4e-11
Identities = 35/81 (43%), Positives = 49/81 (60%)
Frame = -3
Query: 619 VYDRITGFRETLRADINIGRYQPPGEEKMDINLVIVSHGLTLRVFLMRWYKWTVEQFEGL 440
VYDR+ GF E+L + P N+++V+HGL +R+F MRW+ WTV +FE L
Sbjct: 130 VYDRVGGFLESLFRSFEDPDHPP--------NVLLVTHGLAMRLFCMRWFHWTVAEFESL 181
Query: 439 HNLRNAEMLVMEKGYGGRYSL 377
N NAEM ++ G G+YSL
Sbjct: 182 ANPGNAEMRMLVLGADGKYSL 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,986,786
Number of Sequences: 1393205
Number of extensions: 10361730
Number of successful extensions: 26631
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 25713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26619
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
