Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014715A_C01 KMC014715A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC69997.1| HMG I/Y like protein [Glycine max] 37 0.17
ref|NP_061366.1| Pax transcription activation domain interacting... 35 0.64
gb|AAL39250.1| GH12359p [Drosophila melanogaster] 35 0.64
ref|XP_192975.2| similar to Pax transcription activation domain ... 35 0.64
gb|AAL54912.2|AF170083_1 putative transcriptional repressor [Can... 34 0.84
>emb|CAC69997.1| HMG I/Y like protein [Glycine max]
Length = 413
Score = 36.6 bits (83), Expect = 0.17
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -3
Query: 487 PLQEHLLPQPLPEPQITYQQQHLQTQ-LHQLFQFQPHASFPS 365
PL++ QP P+PQ+ Y+QQ+ Q Q L Q F FQPH S PS
Sbjct: 374 PLRDETHQQPQPQPQV-YEQQYPQPQPLLQQF-FQPHTSAPS 413
>ref|NP_061366.1| Pax transcription activation domain interacting protein [Mus
musculus] gi|4336734|gb|AAD17923.1| Pax transcription
activation domain interacting protein PTIP [Mus
musculus]
Length = 1056
Score = 34.7 bits (78), Expect = 0.64
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = -3
Query: 499 PEQLPLQEHLLPQPLPEPQITYQQQHLQTQLHQLFQFQPHASFPS*EEREDLHETQF 329
P Q P Q+H P +PQI QQ Q Q Q Q QP+ PS + + +H+ QF
Sbjct: 401 PPQQPQQQH--PALHLQPQIMQLQQQQQQQQQQQQQPQPYPQPPSHQFPQQVHQHQF 455
>gb|AAL39250.1| GH12359p [Drosophila melanogaster]
Length = 573
Score = 34.7 bits (78), Expect = 0.64
Identities = 19/49 (38%), Positives = 26/49 (52%)
Frame = -2
Query: 494 TTTIAGTSTTPATAGATDHISATTSPDTAASTFSISTTCFIPKLGRERR 348
TTT T+TTPAT + + TT+P T S+ S +TT R +R
Sbjct: 231 TTTTTTTTTTPATTTTSTTPATTTTPKTTTSSTSTTTTTTPKPPARSKR 279
>ref|XP_192975.2| similar to Pax transcription activation domain interacting protein
[Mus musculus]
Length = 645
Score = 34.7 bits (78), Expect = 0.64
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = -3
Query: 499 PEQLPLQEHLLPQPLPEPQITYQQQHLQTQLHQLFQFQPHASFPS*EEREDLHETQF 329
P Q P Q+H P +PQI QQ Q Q Q Q QP+ PS + + +H+ QF
Sbjct: 401 PPQQPQQQH--PALHLQPQIMQLQQQQQQQQQQQQQPQPYPQPPSHQFPQQVHQHQF 455
>gb|AAL54912.2|AF170083_1 putative transcriptional repressor [Candida albicans]
Length = 1085
Score = 34.3 bits (77), Expect = 0.84
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Frame = -3
Query: 505 KIPEQLPLQE--HLLPQPLPE--------PQITYQQQHLQTQLHQLFQFQPHASFP 368
+I E+ P QE H P P P+ PQ +Q QH Q Q QL Q PH S P
Sbjct: 615 QIQEKPPTQEQPHHQPPPPPQHQQQSQSQPQPPHQPQHTQNQSPQLAQLPPHHSNP 670
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,040,713
Number of Sequences: 1393205
Number of extensions: 7967359
Number of successful extensions: 35554
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 29410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34970
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
