Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014675A_C01 KMC014675A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03089.1| contains similarity to pherophorin~gene_id:T5M7.... 164 6e-40
ref|NP_189197.1| unknown protein; protein id: At3g25690.1 [Arabi... 164 6e-40
gb|AAM91093.1| AT4g18560/F28J12_220 [Arabidopsis thaliana] gi|28... 114 7e-25
ref|NP_193591.1| unknown protein; protein id: At4g18570.1 [Arabi... 114 7e-25
dbj|BAB86567.1| pherophorin - like protein [Oryza sativa (japoni... 106 3e-22
>dbj|BAB03089.1| contains similarity to pherophorin~gene_id:T5M7.14 [Arabidopsis
thaliana] gi|28071265|dbj|BAC55960.1| actin binding
protein [Arabidopsis thaliana]
Length = 1004
Score = 164 bits (416), Expect = 6e-40
Identities = 81/113 (71%), Positives = 94/113 (82%)
Frame = -3
Query: 601 DLAISRYKEFGIPVNWLLDSGVVGKIKLSSVQLAKKYMKRVTSELDALSGSEKEPAREFL 422
D+AISRYKEFGIPV+WL D+GVVGKIKLSSVQLAKKYMKRV ELD++SGS+K+P REFL
Sbjct: 890 DMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFL 949
Query: 421 TLQGVRFAFRVHQFAGGFDADSMKAFEDLRNRIQTPQAGEDNKPETAGEDNES 263
LQGVRFAFRVHQFAGGFDA+SMKAFE+LR+R +T +N + ES
Sbjct: 950 LLQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKTESGDNNNNNNNNSNEEES 1002
>ref|NP_189197.1| unknown protein; protein id: At3g25690.1 [Arabidopsis thaliana]
Length = 939
Score = 164 bits (416), Expect = 6e-40
Identities = 81/113 (71%), Positives = 94/113 (82%)
Frame = -3
Query: 601 DLAISRYKEFGIPVNWLLDSGVVGKIKLSSVQLAKKYMKRVTSELDALSGSEKEPAREFL 422
D+AISRYKEFGIPV+WL D+GVVGKIKLSSVQLAKKYMKRV ELD++SGS+K+P REFL
Sbjct: 825 DMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFL 884
Query: 421 TLQGVRFAFRVHQFAGGFDADSMKAFEDLRNRIQTPQAGEDNKPETAGEDNES 263
LQGVRFAFRVHQFAGGFDA+SMKAFE+LR+R +T +N + ES
Sbjct: 885 LLQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKTESGDNNNNNNNNSNEEES 937
>gb|AAM91093.1| AT4g18560/F28J12_220 [Arabidopsis thaliana]
gi|28416477|gb|AAO42769.1| At4g18560/F28J12_220
[Arabidopsis thaliana]
Length = 642
Score = 114 bits (286), Expect = 7e-25
Identities = 54/93 (58%), Positives = 77/93 (82%)
Frame = -3
Query: 595 AISRYKEFGIPVNWLLDSGVVGKIKLSSVQLAKKYMKRVTSELDALSGSEKEPAREFLTL 416
A +++K F IPV+W+L++G+ +IKL+SV+LA KYMKRV++EL+A+ G P E L +
Sbjct: 531 AATKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGG--GPEEEELIV 588
Query: 415 QGVRFAFRVHQFAGGFDADSMKAFEDLRNRIQT 317
QGVRFAFRVHQFAGGFDA++MKAFE+LR++ ++
Sbjct: 589 QGVRFAFRVHQFAGGFDAETMKAFEELRDKARS 621
>ref|NP_193591.1| unknown protein; protein id: At4g18570.1 [Arabidopsis thaliana]
gi|7486298|pir||T04552 hypothetical protein F28J12.220 -
Arabidopsis thaliana gi|2832661|emb|CAA16736.1|
pherophorin - like protein [Arabidopsis thaliana]
gi|7268650|emb|CAB78858.1| pherophorin-like protein
[Arabidopsis thaliana]
Length = 637
Score = 114 bits (286), Expect = 7e-25
Identities = 54/93 (58%), Positives = 77/93 (82%)
Frame = -3
Query: 595 AISRYKEFGIPVNWLLDSGVVGKIKLSSVQLAKKYMKRVTSELDALSGSEKEPAREFLTL 416
A +++K F IPV+W+L++G+ +IKL+SV+LA KYMKRV++EL+A+ G P E L +
Sbjct: 526 AATKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGG--GPEEEELIV 583
Query: 415 QGVRFAFRVHQFAGGFDADSMKAFEDLRNRIQT 317
QGVRFAFRVHQFAGGFDA++MKAFE+LR++ ++
Sbjct: 584 QGVRFAFRVHQFAGGFDAETMKAFEELRDKARS 616
>dbj|BAB86567.1| pherophorin - like protein [Oryza sativa (japonica cultivar-group)]
Length = 610
Score = 106 bits (264), Expect = 3e-22
Identities = 54/93 (58%), Positives = 69/93 (74%), Gaps = 1/93 (1%)
Frame = -3
Query: 601 DLAISRYKEFGIPVNWLL-DSGVVGKIKLSSVQLAKKYMKRVTSELDALSGSEKEPAREF 425
D A RY F IP W+ D+G+V +IKL SV+LA KY+KRV+SEL+A+ G P E
Sbjct: 496 DGATGRYSRFQIPCEWMQPDTGIVSQIKLQSVKLAMKYLKRVSSELEAIKGG---PDEEE 552
Query: 424 LTLQGVRFAFRVHQFAGGFDADSMKAFEDLRNR 326
L LQGVRFAFRVHQFAGGFD D+M+AF++L+ +
Sbjct: 553 LMLQGVRFAFRVHQFAGGFDVDTMRAFQELKEK 585
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,887,105
Number of Sequences: 1393205
Number of extensions: 10695239
Number of successful extensions: 42248
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41170
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
