Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014662A_C01 KMC014662A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09854.1| cyclin D3.2 protein [Nicotiana tabacum] 78 5e-14
ref|NP_190576.1| Cyclin D3;3; protein id: At3g50070.1, supported... 74 9e-13
ref|NP_201527.1| Cyclin D3;2; protein id: At5g67260.1, supported... 70 2e-11
emb|CAB40540.1| cyclin D3 [Medicago sativa] 65 5e-10
pir||T09598 cyclin 4, D-type - alfalfa gi|1150932|emb|CAA61334.1... 65 5e-10
>emb|CAA09854.1| cyclin D3.2 protein [Nicotiana tabacum]
Length = 367
Score = 78.2 bits (191), Expect = 5e-14
Identities = 37/68 (54%), Positives = 50/68 (73%)
Frame = -3
Query: 485 KRKRSEPSSPGGVIDASFSCDSSNDSWATTSAVSTSLEPLFKRSRAQDQQMRLPSVNRVS 306
++ +S P SP GVIDA FSCDSSNDSW+ S++S+S EP +KR + QDQ M L ++ VS
Sbjct: 300 RKHQSVPGSPSGVIDAYFSCDSSNDSWSVASSISSSPEPQYKRIKTQDQTMTLAPLSSVS 359
Query: 305 IDVLNSPR 282
+ V +SPR
Sbjct: 360 VVVGSSPR 367
>ref|NP_190576.1| Cyclin D3;3; protein id: At3g50070.1, supported by cDNA: 36056.,
supported by cDNA: gi_15450594, supported by cDNA:
gi_17380631 [Arabidopsis thaliana]
gi|11357237|pir||T45860 cyclin D3-like protein -
Arabidopsis thaliana gi|6522928|emb|CAB62115.1| cyclin
D3-like protein [Arabidopsis thaliana]
gi|15450595|gb|AAK96569.1| AT3g50070/F3A4_150
[Arabidopsis thaliana] gi|17380632|gb|AAL36079.1|
AT3g50070/F3A4_150 [Arabidopsis thaliana]
gi|21593092|gb|AAM65041.1| cyclin D3-like protein
[Arabidopsis thaliana]
Length = 361
Score = 73.9 bits (180), Expect = 9e-13
Identities = 40/76 (52%), Positives = 51/76 (66%), Gaps = 9/76 (11%)
Frame = -3
Query: 488 PKRKR-----SEPSSPGGVIDASFSCDSSNDSWATTSAVST----SLEPLFKRSRAQDQQ 336
P +KR +P+SP GV DASFS DSSN+SW +++ S S EPL KR R Q+QQ
Sbjct: 283 PSKKRMMNWMQQPASPIGVFDASFSSDSSNESWVVSASASVSSSPSSEPLLKRRRVQEQQ 342
Query: 335 MRLPSVNRVSIDVLNS 288
MRL S+NR+ DVL+S
Sbjct: 343 MRLSSINRMFFDVLSS 358
>ref|NP_201527.1| Cyclin D3;2; protein id: At5g67260.1, supported by cDNA: 36467.,
supported by cDNA: gi_17065137, supported by cDNA:
gi_20259811 [Arabidopsis thaliana]
gi|9759275|dbj|BAB09645.1| cyclin D3-like protein
[Arabidopsis thaliana] gi|17065138|gb|AAL32723.1| cyclin
D3-like protein [Arabidopsis thaliana]
gi|20259812|gb|AAM13253.1| cyclin D3-like protein
[Arabidopsis thaliana] gi|21593133|gb|AAM65082.1| cyclin
D3-like protein [Arabidopsis thaliana]
Length = 367
Score = 69.7 bits (169), Expect = 2e-11
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 9/79 (11%)
Frame = -3
Query: 491 HPKRKRS----EPSSPGGVIDASFSCDSSNDSW-----ATTSAVSTSLEPLFKRSRAQDQ 339
+P +KR + SP GV+D DSSN SW A+ S+ S+S EPL KR R Q+Q
Sbjct: 292 NPSKKRMMNLVDQDSPSGVLDFD---DSSNSSWNVSTTASVSSSSSSPEPLLKRRRVQEQ 348
Query: 338 QMRLPSVNRVSIDVLNSPR 282
QMRLPS+NR+ +DVL+SPR
Sbjct: 349 QMRLPSINRMFLDVLSSPR 367
>emb|CAB40540.1| cyclin D3 [Medicago sativa]
Length = 378
Score = 64.7 bits (156), Expect = 5e-10
Identities = 32/65 (49%), Positives = 43/65 (65%), Gaps = 1/65 (1%)
Frame = -3
Query: 485 KRKRSE-PSSPGGVIDASFSCDSSNDSWATTSAVSTSLEPLFKRSRAQDQQMRLPSVNRV 309
KRK E P SP GVIDA FS D SNDSW ++ ++ EP+FK+++ Q Q M L +NRV
Sbjct: 308 KRKYEEIPGSPSGVIDAVFSSDGSNDSWTVGASSYSTSEPVFKKTKNQGQNMNLSPINRV 367
Query: 308 SIDVL 294
+ +L
Sbjct: 368 IVGIL 372
>pir||T09598 cyclin 4, D-type - alfalfa gi|1150932|emb|CAA61334.1| cyclin
[Medicago sativa]
Length = 386
Score = 64.7 bits (156), Expect = 5e-10
Identities = 32/65 (49%), Positives = 43/65 (65%), Gaps = 1/65 (1%)
Frame = -3
Query: 485 KRKRSE-PSSPGGVIDASFSCDSSNDSWATTSAVSTSLEPLFKRSRAQDQQMRLPSVNRV 309
KRK E P SP GVIDA FS D SNDSW ++ ++ EP+FK+++ Q Q M L +NRV
Sbjct: 316 KRKYEEIPGSPSGVIDAVFSSDGSNDSWTVGASSYSTSEPVFKKTKNQGQNMNLSPINRV 375
Query: 308 SIDVL 294
+ +L
Sbjct: 376 IVGIL 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,389,871
Number of Sequences: 1393205
Number of extensions: 7053606
Number of successful extensions: 16060
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 15741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16053
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
