Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014641A_C01 KMC014641A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA40967.1| c-ros-1 unknown protein 33 1.6
gb|AAA40966.1| c-ros-1 tyrosine kinase (put.); putative 33 1.6
ref|NP_037006.1| rat heart - derived c - ros - 1 proto - oncogen... 33 1.6
gb|EAA19158.1| tRNA nucleotidyltransferase, mitochondrial precur... 32 4.7
ref|NP_704208.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.1
>gb|AAA40967.1| c-ros-1 unknown protein
Length = 1854
Score = 33.5 bits (75), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (43%)
Frame = +1
Query: 376 ESLSLSLSLSAPSSALLQHSKFRTNNRKYSRAFRRNGRCSQGTFMTCIDCNI 531
E+ SL L APS+A L F KYS + CSQG C N+
Sbjct: 1639 ENTSLLLDWKAPSNANLTRFWFELQKWKYSEFYHVKASCSQGPVYVCNIANL 1690
>gb|AAA40966.1| c-ros-1 tyrosine kinase (put.); putative
Length = 2317
Score = 33.5 bits (75), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (43%)
Frame = +1
Query: 376 ESLSLSLSLSAPSSALLQHSKFRTNNRKYSRAFRRNGRCSQGTFMTCIDCNI 531
E+ SL L APS+A L F KYS + CSQG C N+
Sbjct: 1639 ENTSLLLDWKAPSNANLTRFWFELQKWKYSEFYHVKASCSQGPVYVCNIANL 1690
>ref|NP_037006.1| rat heart - derived c - ros - 1 proto - oncogene [Rattus norvegicus]
gi|2117871|pir||I73957 kinase-related protein c-ros-1
precursor - rat gi|203600|gb|AAA40968.1| c-ros-1 tyrosine
kinase (put.); putative
Length = 2338
Score = 33.5 bits (75), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (43%)
Frame = +1
Query: 376 ESLSLSLSLSAPSSALLQHSKFRTNNRKYSRAFRRNGRCSQGTFMTCIDCNI 531
E+ SL L APS+A L F KYS + CSQG C N+
Sbjct: 1660 ENTSLLLDWKAPSNANLTRFWFELQKWKYSEFYHVKASCSQGPVYVCNIANL 1711
>gb|EAA19158.1| tRNA nucleotidyltransferase, mitochondrial precursor [Plasmodium
yoelii yoelii]
Length = 772
Score = 32.0 bits (71), Expect = 4.7
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 250 FTPLSYKENLHFLLYCIFVLAFKSY*VKCDISIK 149
F L+YKEN++++ C+F+L K+Y + +IK
Sbjct: 560 FYDLNYKENINYIHMCLFLLPLKNYYIYIKKNIK 593
>ref|NP_704208.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498946|emb|CAD51024.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 5561
Score = 31.6 bits (70), Expect = 6.1
Identities = 32/104 (30%), Positives = 42/104 (39%), Gaps = 28/104 (26%)
Frame = -3
Query: 229 ENLHFLLYCIFVLAF--------KSY*VKCDISIKIPM*SLNTRQYGLWIRVSYAQSMYA 74
EN+ +L +C F+ F K Y K + + I ++NT Y V Y QS Y
Sbjct: 1048 ENIQYLEFCRFIYLFLLICVDNLKMY-KKMEKYLYIKKKNINTHHY-----VEYQQSKYN 1101
Query: 73 CFKF---------SVCYSLQLSL-----------VACFTWKKKK 2
CF+F S YSL SL + C KKKK
Sbjct: 1102 CFRFNFDKDTNISSDQYSLSSSLPNTNTTCTTERLICINKKKKK 1145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,329,516
Number of Sequences: 1393205
Number of extensions: 7975291
Number of successful extensions: 23951
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21292
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
