Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014540A_C01 KMC014540A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04914 hypothetical protein T10I14.160 - Arabidopsis thalia... 111 5e-24
ref|NP_567660.1| putative protein; protein id: At4g22330.1, supp... 111 5e-24
gb|AAO38461.1| putative Acyl-CoA independent ceramide synthase [... 104 7e-22
ref|XP_218942.1| similar to Alkaline phytoceramidase (aPHC) (Alk... 40 0.026
ref|NP_079684.1| RIKEN cDNA 1110057L18; expressed sequence AV015... 39 0.034
>pir||T04914 hypothetical protein T10I14.160 - Arabidopsis thaliana
gi|2832683|emb|CAA16783.1| putative protein [Arabidopsis
thaliana] gi|7269079|emb|CAB79188.1| putative protein
[Arabidopsis thaliana]
Length = 386
Score = 111 bits (278), Expect = 5e-24
Identities = 50/63 (79%), Positives = 54/63 (85%)
Frame = -1
Query: 563 KEISRLPFNPQGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVYLMGFLPYVKIEKS 384
K IS+ P NPQGHALWHVFM FNSY ANTFLMFCRAQQRGW+PKV Y +G LPYVKIEK
Sbjct: 324 KTISQWPVNPQGHALWHVFMSFNSYCANTFLMFCRAQQRGWNPKVKYFLGVLPYVKIEKP 383
Query: 383 KSQ 375
K+Q
Sbjct: 384 KTQ 386
>ref|NP_567660.1| putative protein; protein id: At4g22330.1, supported by cDNA:
gi_14488265 [Arabidopsis thaliana]
gi|14488266|dbj|BAB60897.1| Acyl-CoA independent
ceramide synthase [Arabidopsis thaliana]
Length = 255
Score = 111 bits (278), Expect = 5e-24
Identities = 50/63 (79%), Positives = 54/63 (85%)
Frame = -1
Query: 563 KEISRLPFNPQGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVYLMGFLPYVKIEKS 384
K IS+ P NPQGHALWHVFM FNSY ANTFLMFCRAQQRGW+PKV Y +G LPYVKIEK
Sbjct: 193 KTISQWPVNPQGHALWHVFMSFNSYCANTFLMFCRAQQRGWNPKVKYFLGVLPYVKIEKP 252
Query: 383 KSQ 375
K+Q
Sbjct: 253 KTQ 255
>gb|AAO38461.1| putative Acyl-CoA independent ceramide synthase [Oryza sativa
(japonica cultivar-group)]
Length = 257
Score = 104 bits (260), Expect = 7e-22
Identities = 44/63 (69%), Positives = 52/63 (81%)
Frame = -1
Query: 563 KEISRLPFNPQGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVYLMGFLPYVKIEKS 384
K++S NPQGHA WH+ MGFNSYFANTFLMFCRAQQRGW PK+ +L GFLPYVKI+K
Sbjct: 194 KKLSHWYVNPQGHAWWHILMGFNSYFANTFLMFCRAQQRGWEPKITHLFGFLPYVKIQKP 253
Query: 383 KSQ 375
+ +
Sbjct: 254 QKR 256
>ref|XP_218942.1| similar to Alkaline phytoceramidase (aPHC) (Alkaline ceramidase)
[Rattus norvegicus]
Length = 160
Score = 39.7 bits (91), Expect = 0.026
Identities = 18/51 (35%), Positives = 24/51 (46%)
Frame = -1
Query: 533 QGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVYLMGFLPYVKIEKSK 381
Q HA WH+ G SY F ++ R + PKV +L G P V E +
Sbjct: 108 QFHAWWHILTGLGSYLHILFSLYTRTLYLRYRPKVKFLFGIWPMVMFEPQR 158
>ref|NP_079684.1| RIKEN cDNA 1110057L18; expressed sequence AV015045 [Mus musculus]
gi|12835417|dbj|BAB23250.1| unnamed protein product [Mus
musculus]
Length = 267
Score = 39.3 bits (90), Expect = 0.034
Identities = 18/51 (35%), Positives = 24/51 (46%)
Frame = -1
Query: 533 QGHALWHVFMGFNSYFANTFLMFCRAQQRGWSPKVVYLMGFLPYVKIEKSK 381
Q HA WH+ G SY F ++ R + PKV +L G P V E +
Sbjct: 215 QFHAWWHILTGLGSYLHILFSLYTRTLYLRYRPKVKFLFGIWPAVMFEPQR 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,544,037
Number of Sequences: 1393205
Number of extensions: 9352341
Number of successful extensions: 19924
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19921
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
