Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014500A_C01 KMC014500A_c01
(439 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK38497.1|AC087181_13 putative snRNP protein [Oryza sativa] 99 9e-21
ref|NP_180929.1| U5 small nuclear ribonucleoprotein, putative; p... 94 5e-19
pir||G86407 hypothetical protein F3H9.16 [imported] - Arabidopsi... 64 4e-10
ref|NP_703529.1| snrnp protein, putative [Plasmodium falciparum ... 53 1e-06
gb|EAA15864.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii] 46 9e-05
>gb|AAK38497.1|AC087181_13 putative snRNP protein [Oryza sativa]
Length = 736
Score = 99.4 bits (246), Expect = 9e-21
Identities = 44/49 (89%), Positives = 49/49 (99%)
Frame = -1
Query: 436 DTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFA 290
+TD+F+DLKQMLIQSNSPVPPELARHEASKFKPGS+PDRPPRRNDTV+A
Sbjct: 686 NTDIFFDLKQMLIQSNSPVPPELARHEASKFKPGSVPDRPPRRNDTVYA 734
>ref|NP_180929.1| U5 small nuclear ribonucleoprotein, putative; protein id:
At2g33730.1, supported by cDNA: gi_17473907, supported
by cDNA: gi_20259791 [Arabidopsis thaliana]
gi|25408302|pir||H84748 hypothetical protein At2g33730
[imported] - Arabidopsis thaliana
gi|1707017|gb|AAC69128.1| putative U5 small nuclear
ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana] gi|17473908|gb|AAL38370.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana] gi|20259792|gb|AAM13243.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana]
Length = 733
Score = 93.6 bits (231), Expect = 5e-19
Identities = 40/49 (81%), Positives = 47/49 (95%)
Frame = -1
Query: 439 HDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVF 293
HDT+VFYDLKQML+QSNS VPPELARHEAS+FKPG++PDRPPR +DTV+
Sbjct: 683 HDTEVFYDLKQMLVQSNSAVPPELARHEASRFKPGTVPDRPPRHSDTVY 731
>pir||G86407 hypothetical protein F3H9.16 [imported] - Arabidopsis thaliana
gi|9795619|gb|AAF98437.1|AC021044_16 Similar to RNA
helicases [Arabidopsis thaliana]
Length = 610
Score = 63.9 bits (154), Expect = 4e-10
Identities = 30/39 (76%), Positives = 32/39 (81%)
Frame = -1
Query: 436 DTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDR 320
D DVFY LKQ L + NS VPPELARHEASKFKPG+ PDR
Sbjct: 568 DKDVFYGLKQKLNECNSLVPPELARHEASKFKPGTFPDR 606
>ref|NP_703529.1| snrnp protein, putative [Plasmodium falciparum 3D7]
gi|23504671|emb|CAD51549.1| snrnp protein, putative
[Plasmodium falciparum 3D7]
Length = 1123
Score = 52.8 bits (125), Expect = 1e-06
Identities = 25/49 (51%), Positives = 36/49 (73%)
Frame = -1
Query: 439 HDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVF 293
HD+ +FYDLKQ LI SN+ VP ELA + ASK KPG++ + P++N ++
Sbjct: 1074 HDSHLFYDLKQFLISSNNIVPLELANNPASKVKPGTVM-QTPKKNQILY 1121
>gb|EAA15864.1| U5 snRNP 100 kD protein [Plasmodium yoelii yoelii]
Length = 967
Score = 46.2 bits (108), Expect = 9e-05
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = -1
Query: 436 DTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSI 329
DT +FYDL+Q LI SN+ VP ELA + AS+ KPG++
Sbjct: 920 DTHLFYDLRQFLISSNNIVPLELANNPASQVKPGTV 955
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,402,723
Number of Sequences: 1393205
Number of extensions: 6858221
Number of successful extensions: 15784
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15774
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
