Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014497A_C01 KMC014497A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit... 105 3e-22
gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit... 105 3e-22
gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon ... 103 1e-21
pir||S66569 biotin carboxyl carrier protein (clone BP6) precurso... 102 2e-21
ref|NP_568316.1| biotin carboxyl carrier protein 2 (BCCP2); prot... 101 4e-21
>gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit [Glycine max]
Length = 284
Score = 105 bits (262), Expect = 3e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Frame = -1
Query: 480 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTITEIVAEDGKPVSVDAPLFVIAP 313
FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGT+ E+VAEDGKPVSVD PLFVI P
Sbjct: 229 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284
>gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit precursor [Glycine max]
Length = 284
Score = 105 bits (262), Expect = 3e-22
Identities = 51/56 (91%), Positives = 53/56 (94%)
Frame = -1
Query: 480 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTITEIVAEDGKPVSVDAPLFVIAP 313
FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGT+ E+VAEDGKPVSVD PLFVI P
Sbjct: 229 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTVAEVVAEDGKPVSVDTPLFVIVP 284
>gb|AAO66472.1| biotin carboxylase carrier protein [Lycopersicon esculentum]
Length = 285
Score = 103 bits (256), Expect = 1e-21
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = -1
Query: 480 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTITEIVAEDGKPVSVDAPLFVIAP 313
FVKVGDKVQKGQV+CIIEAMKLMNEIEAD+SGTI E+VAEDGKPVSVD PLFVI P
Sbjct: 230 FVKVGDKVQKGQVLCIIEAMKLMNEIEADRSGTIVEVVAEDGKPVSVDTPLFVIKP 285
>pir||S66569 biotin carboxyl carrier protein (clone BP6) precursor - rape
gi|1070008|emb|CAA62265.1| Biotin carboxyl carrier
protein [Brassica napus] gi|1589044|prf||2210244E Ac-CoA
carboxylase:ISOTYPE=bp6
Length = 251
Score = 102 bits (255), Expect = 2e-21
Identities = 49/56 (87%), Positives = 54/56 (95%)
Frame = -1
Query: 480 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTITEIVAEDGKPVSVDAPLFVIAP 313
FVKVGDKVQKGQV+CIIEAMKLMNEIEA++SGTITE++AEDGKPVSVD PLF IAP
Sbjct: 196 FVKVGDKVQKGQVVCIIEAMKLMNEIEAEKSGTITELLAEDGKPVSVDTPLFTIAP 251
>ref|NP_568316.1| biotin carboxyl carrier protein 2 (BCCP2); protein id: At5g15530.1,
supported by cDNA: 25607., supported by cDNA: gi_8886868
[Arabidopsis thaliana]
gi|8886869|gb|AAF80592.1|AF223948_1 biotin carboxyl
carrier protein isoform 2 [Arabidopsis thaliana]
gi|21554426|gb|AAM63527.1| biotin carboxyl carrier
protein precursor-like protein [Arabidopsis thaliana]
Length = 255
Score = 101 bits (252), Expect = 4e-21
Identities = 48/56 (85%), Positives = 54/56 (95%)
Frame = -1
Query: 480 FVKVGDKVQKGQVICIIEAMKLMNEIEADQSGTITEIVAEDGKPVSVDAPLFVIAP 313
FVKVGDKVQKGQ++CIIEAMKLMNEIEA++SGTI E++AEDGKPVSVD PLFVIAP
Sbjct: 200 FVKVGDKVQKGQIVCIIEAMKLMNEIEAEKSGTIMELLAEDGKPVSVDTPLFVIAP 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,205,845
Number of Sequences: 1393205
Number of extensions: 7916984
Number of successful extensions: 19334
Number of sequences better than 10.0: 613
Number of HSP's better than 10.0 without gapping: 17970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19256
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
