Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014477A_C01 KMC014477A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC12995.1| putative AUX1-like permease [Medicago truncatula... 169 1e-41
emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula... 149 2e-35
ref|NP_565882.1| expressed protein; protein id: At2g38120.1, sup... 147 7e-35
gb|AAF21982.1|AF115543_1 AUX1-like protein [Populus tremula x Po... 141 4e-33
gb|AAG17171.1|AF190880_1 putative AUX1-like permease [Populus tr... 140 6e-33
>emb|CAC12995.1| putative AUX1-like permease [Medicago truncatula]
gi|28624758|gb|AAM55302.1| auxin influx carrier protein
[Medicago truncatula]
Length = 479
Score = 169 bits (429), Expect = 1e-41
Identities = 77/87 (88%), Positives = 81/87 (92%)
Frame = -2
Query: 505 ASAHMLTYRSASARQNAAEKLPFFIPSWTAMFVFNAFVVVWVTVVGFGFGGWASMTNFIK 326
ASAHMLTYRSASARQNAAEKLP IPSWT M+V NAFVV+WVT+VGFGFGGWASMTNFIK
Sbjct: 393 ASAHMLTYRSASARQNAAEKLPKVIPSWTLMYVINAFVVIWVTIVGFGFGGWASMTNFIK 452
Query: 325 QVDTFGLFAKCYQCPPKFSASNHTLHH 245
QVDTFGLFAKCYQCPPK ASNHT+HH
Sbjct: 453 QVDTFGLFAKCYQCPPKLPASNHTMHH 479
>emb|CAC12996.1| putative AUX1-like permease [Medicago truncatula]
gi|21586462|gb|AAM55304.1| auxin influx carrier protein
[Medicago truncatula]
Length = 484
Score = 149 bits (376), Expect = 2e-35
Identities = 68/91 (74%), Positives = 80/91 (87%), Gaps = 4/91 (4%)
Frame = -2
Query: 505 ASAHMLTYRSASARQNAAEKLPFFIPSWTAMFVFNAFVVVWVTVVGFGFGGWASMTNFIK 326
++AHMLTYR ASAR+NAAEK PFF+PSWTAM++FNAF+V+WV VVGFGFGGWASMTNFI+
Sbjct: 394 SAAHMLTYRKASARKNAAEKPPFFMPSWTAMYIFNAFIVIWVLVVGFGFGGWASMTNFIR 453
Query: 325 QVDTFGLFAKCYQC--PPKFSAS--NHTLHH 245
Q+DTFGLFAKCYQC PP +A+ H LHH
Sbjct: 454 QIDTFGLFAKCYQCKPPPVMAAAPPPHALHH 484
>ref|NP_565882.1| expressed protein; protein id: At2g38120.1, supported by cDNA:
31586., supported by cDNA: gi_15450815, supported by
cDNA: gi_20259903 [Arabidopsis thaliana]
gi|7485590|pir||T01244 hypothetical protein At2g38120
[imported] - Arabidopsis thaliana
gi|1531758|emb|CAA67308.1| AUX1 [Arabidopsis thaliana]
gi|3335360|gb|AAC27161.1| expressed protein [Arabidopsis
thaliana] gi|15450816|gb|AAK96679.1| Unknown protein
[Arabidopsis thaliana] gi|20259904|gb|AAM13299.1|
unknown protein [Arabidopsis thaliana]
gi|21592703|gb|AAM64652.1| LAX1 / AUX1-like permease
[Arabidopsis thaliana]
Length = 485
Score = 147 bits (371), Expect = 7e-35
Identities = 68/88 (77%), Positives = 77/88 (87%), Gaps = 3/88 (3%)
Frame = -2
Query: 499 AHMLTYRSASARQNAAEKLPFFIPSWTAMFVFNAFVVVWVTVVGFGFGGWASMTNFIKQV 320
AHMLTYRSASARQNAAEK PFF+PSWTAM+V NAFVVVWV +VGFGFGGWAS+TNF++QV
Sbjct: 396 AHMLTYRSASARQNAAEKPPFFMPSWTAMYVLNAFVVVWVLIVGFGFGGWASVTNFVRQV 455
Query: 319 DTFGLFAKCYQCPPKFSASN---HTLHH 245
DTFGLFAKCYQC P +A++ LHH
Sbjct: 456 DTFGLFAKCYQCKPAAAAAHAPVSALHH 483
>gb|AAF21982.1|AF115543_1 AUX1-like protein [Populus tremula x Populus tremuloides]
Length = 477
Score = 141 bits (356), Expect = 4e-33
Identities = 63/78 (80%), Positives = 70/78 (88%)
Frame = -2
Query: 499 AHMLTYRSASARQNAAEKLPFFIPSWTAMFVFNAFVVVWVTVVGFGFGGWASMTNFIKQV 320
AHMLTYR +SARQNAAEK PFF+PSWTAM+V N FVVVWV VVGFGFGGWAS+TNF++QV
Sbjct: 395 AHMLTYRKSSARQNAAEKPPFFLPSWTAMYVINTFVVVWVLVVGFGFGGWASVTNFVRQV 454
Query: 319 DTFGLFAKCYQCPPKFSA 266
DTFGLFAKCYQC P +A
Sbjct: 455 DTFGLFAKCYQCKPAVAA 472
>gb|AAG17171.1|AF190880_1 putative AUX1-like permease [Populus tremula x Populus tremuloides]
Length = 473
Score = 140 bits (354), Expect = 6e-33
Identities = 65/83 (78%), Positives = 71/83 (85%)
Frame = -2
Query: 505 ASAHMLTYRSASARQNAAEKLPFFIPSWTAMFVFNAFVVVWVTVVGFGFGGWASMTNFIK 326
A AHMLTYRSASARQNA EK P F+PSWTAM+V NAF+VVWV VVGFG GGWASM+NFIK
Sbjct: 391 ALAHMLTYRSASARQNAVEKPPVFLPSWTAMYVLNAFIVVWVLVVGFGLGGWASMSNFIK 450
Query: 325 QVDTFGLFAKCYQCPPKFSASNH 257
QVDTFGLFAKC QCP +A +H
Sbjct: 451 QVDTFGLFAKCCQCPRSAAAKHH 473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,422,506
Number of Sequences: 1393205
Number of extensions: 11440069
Number of successful extensions: 32374
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32313
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
