Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014437A_C01 KMC014437A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565651.1| expressed protein; protein id: At2g27460.1, sup... 202 2e-51
emb|CAD40592.1| oj000126_13.14 [Oryza sativa (japonica cultivar-... 133 2e-30
gb|AAH26624.1| Unknown (protein for IMAGE:4981835) [Mus musculus] 32 4.4
ref|XP_131181.3| RIKEN cDNA 2310020L09 [Mus musculus] 32 4.4
gb|AAH49257.1| Similar to SEC24 related gene family, member D (S... 32 4.4
>ref|NP_565651.1| expressed protein; protein id: At2g27460.1, supported by cDNA:
gi_15450829 [Arabidopsis thaliana]
gi|25407899|pir||B84673 hypothetical protein At2g27460
[imported] - Arabidopsis thaliana
gi|4314388|gb|AAD15598.1| expressed protein [Arabidopsis
thaliana] gi|15450830|gb|AAK96686.1| Unknown protein
[Arabidopsis thaliana]
Length = 745
Score = 202 bits (514), Expect = 2e-51
Identities = 95/117 (81%), Positives = 108/117 (92%)
Frame = -2
Query: 577 AYPRHSLSRAALITSGSPIFFLDAFTVLIVFYSSTADPTLPFPPPHDCLLRTTINKLKQE 398
AYPRHSLSRAALITSGSPIFFLDA+T LIVFYSSTADP++PFPPP DCLLR TINK+KQE
Sbjct: 629 AYPRHSLSRAALITSGSPIFFLDAYTTLIVFYSSTADPSIPFPPPQDCLLRQTINKVKQE 688
Query: 397 RCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFMK 227
R ITPKL+FIRGG DDA++FEN+LIEEQDVDG+G S MGFVSFL+DI+Q+V E+MK
Sbjct: 689 RSITPKLVFIRGGRDDATVFENYLIEEQDVDGNGFASAMGFVSFLDDISQRVTEYMK 745
>emb|CAD40592.1| oj000126_13.14 [Oryza sativa (japonica cultivar-group)]
Length = 739
Score = 133 bits (334), Expect = 2e-30
Identities = 65/112 (58%), Positives = 83/112 (74%)
Frame = -2
Query: 562 SLSRAALITSGSPIFFLDAFTVLIVFYSSTADPTLPFPPPHDCLLRTTINKLKQERCITP 383
SLSR+ + S SPIF LDA+T L+V+YS T T+PFPPP DCLLR+ I++LKQER ITP
Sbjct: 629 SLSRS-VFNSESPIFLLDAYTDLLVYYSPTVSSTIPFPPPRDCLLRSKIDRLKQERNITP 687
Query: 382 KLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFMK 227
KL+FI G HDD + FE +LIE+Q VDGS + S GF SFLE I ++ E+ +
Sbjct: 688 KLVFIHGAHDDTTAFERYLIEDQSVDGSLVASATGFRSFLEGIRSRIAEYSR 739
>gb|AAH26624.1| Unknown (protein for IMAGE:4981835) [Mus musculus]
Length = 434
Score = 32.3 bits (72), Expect = 4.4
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = -2
Query: 445 PHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSF 266
PH LR +N ++Q++ + KLI ++ F FL+E++ GL +V F
Sbjct: 367 PHSQQLRMIMNNIQQKKPYSMKLIVVKQREQREMAFRQFLVEDK-----GLYGGSSYVDF 421
Query: 265 LEDITQKVLEFM 230
L + +++ + +
Sbjct: 422 LCCVHKEICQLL 433
>ref|XP_131181.3| RIKEN cDNA 2310020L09 [Mus musculus]
Length = 663
Score = 32.3 bits (72), Expect = 4.4
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = -2
Query: 445 PHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSF 266
PH LR +N ++Q++ + KLI ++ F FL+E++ GL +V F
Sbjct: 596 PHSQQLRMIMNNIQQKKPYSMKLIVVKQREQREMAFRQFLVEDK-----GLYGGSSYVDF 650
Query: 265 LEDITQKVLEFM 230
L + +++ + +
Sbjct: 651 LCCVHKEICQLL 662
>gb|AAH49257.1| Similar to SEC24 related gene family, member D (S. cerevisiae) [Mus
musculus]
Length = 524
Score = 32.3 bits (72), Expect = 4.4
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = -2
Query: 445 PHDCLLRTTINKLKQERCITPKLIFIRGGHDDASIFENFLIEEQDVDGSGLTSVMGFVSF 266
PH LR +N ++Q++ + KLI ++ F FL+E++ GL +V F
Sbjct: 457 PHSQQLRMIMNNIQQKKPYSMKLIVVKQREQREMAFRQFLVEDK-----GLYGGSSYVDF 511
Query: 265 LEDITQKVLEFM 230
L + +++ + +
Sbjct: 512 LCCVHKEICQLL 523
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,254,485
Number of Sequences: 1393205
Number of extensions: 10781812
Number of successful extensions: 26196
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 25400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26190
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
