Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014390A_C01 KMC014390A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196814.1| putative protein; protein id: At5g13100.1, supp... 57 8e-08
dbj|BAB62638.1| hypothetical protein~similar to Arabidopsis thal... 43 0.002
ref|XP_137206.1| similar to ribosomal protein S18, cytosolic [va... 34 0.76
ref|XP_288336.1| similar to ribosomal protein S18, cytosolic [va... 31 6.5
gb|AAM88935.1| ras-like nuclear protein [Plasmodium chabaudi] 31 8.4
>ref|NP_196814.1| putative protein; protein id: At5g13100.1, supported by cDNA:
39563., supported by cDNA: gi_16648782 [Arabidopsis
thaliana] gi|9955554|emb|CAC05438.1| putative protein
[Arabidopsis thaliana] gi|16648783|gb|AAL25582.1|
AT5g13100/T19L5_60 [Arabidopsis thaliana]
Length = 354
Score = 57.4 bits (137), Expect = 8e-08
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -1
Query: 493 GWCGAGADHYEPLIAHPSPLVSQEKDAVVL 404
GWCG GADHYEPLIA+PSPL+S EK A+VL
Sbjct: 325 GWCGGGADHYEPLIANPSPLISHEKVALVL 354
>dbj|BAB62638.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
T19L5_60 [Oryza sativa (japonica cultivar-group)]
gi|15408863|dbj|BAB64252.1| P0672D08.27 [Oryza sativa
(japonica cultivar-group)] gi|20804443|dbj|BAB92140.1|
hypothetical protein~similar to Arabidopsis thaliana
chromosome 5, T19L5_60 [Oryza sativa (japonica
cultivar-group)]
Length = 332
Score = 43.1 bits (100), Expect = 0.002
Identities = 20/29 (68%), Positives = 22/29 (74%)
Frame = -1
Query: 490 WCGAGADHYEPLIAHPSPLVSQEKDAVVL 404
WCGAGADHYEPLIA V+ +K AVVL
Sbjct: 304 WCGAGADHYEPLIATVLQNVTPDKAAVVL 332
>ref|XP_137206.1| similar to ribosomal protein S18, cytosolic [validated] - rat [Mus
musculus]
Length = 198
Score = 34.3 bits (77), Expect = 0.76
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 70 PRKHKASDKLSNRNNKTEAGNPEKLYYNSLDSRKLQENLLVQCQG 204
PR+HK D L NR + G ++ N LDS Q + C+G
Sbjct: 22 PRQHKIPDWLVNRQKDVKDGKNSQVLANGLDSNLYQHTKTIGCRG 66
>ref|XP_288336.1| similar to ribosomal protein S18, cytosolic [validated] - rat [Mus
musculus]
Length = 184
Score = 31.2 bits (69), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 70 PRKHKASDKLSNRNNKTEAGNPEKLYYNSLDSRKLQENLLV 192
PR+HK D L NR + G ++ N LDS L +LL+
Sbjct: 22 PRQHKIPDWLVNRQKDVKDGKNSQVLANGLDSNLLGVSLLL 62
>gb|AAM88935.1| ras-like nuclear protein [Plasmodium chabaudi]
Length = 214
Score = 30.8 bits (68), Expect = 8.4
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = +3
Query: 267 ILLGTKTSIQEKQINRPNICVAINRVKNF*FYSISTPQNCRLQKP 401
+L+G K ++++Q+ I +R +NF +Y +S N +KP
Sbjct: 117 VLVGNKVDVKDRQVKSRQI--QFHRKRNFQYYDLSARSNYNFEKP 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,728,506
Number of Sequences: 1393205
Number of extensions: 8197072
Number of successful extensions: 21080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21072
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
