Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014373A_C01 KMC014373A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK59575.1| putative serine threonine-protein kinase [Arabido... 203 1e-51
gb|AAM20697.1| serine/threonine-protein kinase-like protein [Ara... 201 8e-51
ref|NP_200863.2| serine/threonine-protein kinase - like protein;... 201 8e-51
dbj|BAB08238.1| serine/threonine-protein kinase-like protein [Ar... 197 7e-50
ref|NP_566876.2| serine/threonine-protein kinase-like protein; p... 195 4e-49
>gb|AAK59575.1| putative serine threonine-protein kinase [Arabidopsis thaliana]
gi|15810541|gb|AAL07158.1| putative serine
threonine-protein kinase [Arabidopsis thaliana]
Length = 396
Score = 203 bits (517), Expect = 1e-51
Identities = 94/133 (70%), Positives = 109/133 (81%)
Frame = -3
Query: 626 SVSQAFEDNNDVLRRSPGTPVFTAPECILDITYHGKAADTWAVGVTLYCMIVGEYPFLGD 447
SVSQ F+D++D LRRSPGTPVFTAPEC L ITY G++ADTWAVGVTLYCMI+G+YPFLGD
Sbjct: 259 SVSQVFKDDDDQLRRSPGTPVFTAPECCLGITYSGRSADTWAVGVTLYCMILGQYPFLGD 318
Query: 446 TLQDTYDKIVNNPIELPNDMNPQLKKLIEGLLFKDPTLRMTLSDVAVDSWVIGDDGPIPE 267
TLQDTYDKIV+NP+ +P +NP+L+ LIEGLL KDP RMTL VA W+ G+DG I E
Sbjct: 319 TLQDTYDKIVHNPLIIPEGLNPRLRDLIEGLLCKDPNQRMTLKAVAEHPWITGEDGAISE 378
Query: 266 YLCWCKRKNMEGE 228
Y CWCKRK E E
Sbjct: 379 YCCWCKRKAEEEE 391
>gb|AAM20697.1| serine/threonine-protein kinase-like protein [Arabidopsis thaliana]
Length = 407
Score = 201 bits (510), Expect = 8e-51
Identities = 97/139 (69%), Positives = 113/139 (80%), Gaps = 6/139 (4%)
Frame = -3
Query: 626 SVSQAFEDNNDVLRRSPGTPVFTAPECIL--DITYHGKAADTWAVGVTLYCMIVGEYPFL 453
SVSQ F+D++D LRRSPGTPVFTAPEC L ITY G+AADTWAVGVTLYCMI+G+YPFL
Sbjct: 258 SVSQVFKDDDDQLRRSPGTPVFTAPECCLVSGITYSGRAADTWAVGVTLYCMILGQYPFL 317
Query: 452 GDTLQDTYDKIVNNPIELPNDMNPQLKKLIEGLLFKDPTLRMTLSDVAVDSWVIGDDGPI 273
DTLQDTYDKIVNNP+ +P+ +NP L+ LIEGLL KDP+ RMTL +V+ WVIG+DG +
Sbjct: 318 ADTLQDTYDKIVNNPLIIPDGLNPLLRDLIEGLLCKDPSQRMTLKNVSEHPWVIGEDGHV 377
Query: 272 PEYLCWCKR----KNMEGE 228
PEY CWCKR K EGE
Sbjct: 378 PEYFCWCKRNAASKIEEGE 396
>ref|NP_200863.2| serine/threonine-protein kinase - like protein; protein id:
At5g60550.1, supported by cDNA: gi_20466759 [Arabidopsis
thaliana]
Length = 407
Score = 201 bits (510), Expect = 8e-51
Identities = 97/139 (69%), Positives = 113/139 (80%), Gaps = 6/139 (4%)
Frame = -3
Query: 626 SVSQAFEDNNDVLRRSPGTPVFTAPECIL--DITYHGKAADTWAVGVTLYCMIVGEYPFL 453
SVSQ F+D++D LRRSPGTPVFTAPEC L ITY G+AADTWAVGVTLYCMI+G+YPFL
Sbjct: 258 SVSQVFKDDDDQLRRSPGTPVFTAPECCLVSGITYSGRAADTWAVGVTLYCMILGQYPFL 317
Query: 452 GDTLQDTYDKIVNNPIELPNDMNPQLKKLIEGLLFKDPTLRMTLSDVAVDSWVIGDDGPI 273
DTLQDTYDKIVNNP+ +P+ +NP L+ LIEGLL KDP+ RMTL +V+ WVIG+DG +
Sbjct: 318 ADTLQDTYDKIVNNPLIIPDGLNPLLRDLIEGLLCKDPSQRMTLKNVSEHPWVIGEDGHV 377
Query: 272 PEYLCWCKR----KNMEGE 228
PEY CWCKR K EGE
Sbjct: 378 PEYFCWCKRNAASKIEEGE 396
>dbj|BAB08238.1| serine/threonine-protein kinase-like protein [Arabidopsis thaliana]
Length = 402
Score = 197 bits (502), Expect = 7e-50
Identities = 96/137 (70%), Positives = 111/137 (80%), Gaps = 4/137 (2%)
Frame = -3
Query: 626 SVSQAFEDNNDVLRRSPGTPVFTAPECILDITYHGKAADTWAVGVTLYCMIVGEYPFLGD 447
SVSQ D++D LRRSPGTPVFTAPEC L ITY G+AADTWAVGVTLYCMI+G+YPFL D
Sbjct: 258 SVSQ---DDDDQLRRSPGTPVFTAPECCLGITYSGRAADTWAVGVTLYCMILGQYPFLAD 314
Query: 446 TLQDTYDKIVNNPIELPNDMNPQLKKLIEGLLFKDPTLRMTLSDVAVDSWVIGDDGPIPE 267
TLQDTYDKIVNNP+ +P+ +NP L+ LIEGLL KDP+ RMTL +V+ WVIG+DG +PE
Sbjct: 315 TLQDTYDKIVNNPLIIPDGLNPLLRDLIEGLLCKDPSQRMTLKNVSEHPWVIGEDGHVPE 374
Query: 266 YLCWCKR----KNMEGE 228
Y CWCKR K EGE
Sbjct: 375 YFCWCKRNAASKIEEGE 391
>ref|NP_566876.2| serine/threonine-protein kinase-like protein; protein id:
At3g45240.1 [Arabidopsis thaliana]
gi|11358840|pir||T47464 serine/threonine-protein
kinase-like protein - Arabidopsis thaliana
gi|6911862|emb|CAB72162.1| serine/threonine-protein
kinase-like protein [Arabidopsis thaliana]
Length = 382
Score = 195 bits (496), Expect = 4e-49
Identities = 93/133 (69%), Positives = 107/133 (79%)
Frame = -3
Query: 626 SVSQAFEDNNDVLRRSPGTPVFTAPECILDITYHGKAADTWAVGVTLYCMIVGEYPFLGD 447
SVSQ D++D LRRSPGTPVFTAPEC L ITY G++ADTWAVGVTLYCMI+G+YPFLGD
Sbjct: 248 SVSQ---DDDDQLRRSPGTPVFTAPECCLGITYSGRSADTWAVGVTLYCMILGQYPFLGD 304
Query: 446 TLQDTYDKIVNNPIELPNDMNPQLKKLIEGLLFKDPTLRMTLSDVAVDSWVIGDDGPIPE 267
TLQDTYDKIV+NP+ +P +NP+L+ LIEGLL KDP RMTL VA W+ G+DG I E
Sbjct: 305 TLQDTYDKIVHNPLIIPEGLNPRLRDLIEGLLCKDPNQRMTLKAVAEHPWITGEDGAISE 364
Query: 266 YLCWCKRKNMEGE 228
Y CWCKRK E E
Sbjct: 365 YCCWCKRKAEEEE 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,099,233
Number of Sequences: 1393205
Number of extensions: 12016851
Number of successful extensions: 36247
Number of sequences better than 10.0: 3449
Number of HSP's better than 10.0 without gapping: 34049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35236
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
