Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014340A_C01 KMC014340A_c01
(435 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701194.1| hypothetical protein [Plasmodium falciparum 3D7... 33 0.62
ref|NP_691359.1| homoserine O-succinyltransferase [Oceanobacillu... 32 1.8
ref|NP_740137.1| NADH dehydrogenase subunit 5 [Petroscirtes brev... 30 6.8
ref|NP_759585.1| Ubiquinol-cytochrome c reductase, cytochrome B ... 30 8.9
ref|NP_068647.1| cytochrome c oxidase subunit III [Triatoma dimi... 30 8.9
>ref|NP_701194.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496260|gb|AAN35918.1|AE014841_1 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 903
Score = 33.5 bits (75), Expect = 0.62
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +2
Query: 140 NPYFYFYFHFSPRMGKKE*RGDIYDIPQPCKSESSTKSMKK*RPKIR*FKLVMHLNMTQK 319
+P Y+ + + KK+ RG+IYD C +TK KK + KI+ K+ + M K
Sbjct: 310 DPIVEMYYKYLDDVIKKKSRGNIYDNYSLCSMLDNTKKKKK-KKKIKKDKMSKNKEMYDK 368
Query: 320 ECLHATA*RSNCTPHNQSATRLKINRNYAVDD 415
++ N + H+ T + N +D+
Sbjct: 369 INIYNNTNILNTSNHSSYETEIYSNNIINIDE 400
>ref|NP_691359.1| homoserine O-succinyltransferase [Oceanobacillus iheyensis HTE831]
gi|22776117|dbj|BAC12394.1| homoserine
O-succinyltransferase [Oceanobacillus iheyensis]
Length = 303
Score = 32.0 bits (71), Expect = 1.8
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = +1
Query: 157 LFSLLSKDGKKGIKRGHI*YTT-TLQE*IINKVNEEVTSKDQIIQTGHAPEYDPKRMP 327
+F L SKDGK + GH+ Y+ TL E + + D I + P+ DPK+ P
Sbjct: 219 VFLLASKDGKHIMATGHLEYSAETLAE---EYLRDHQRGVDTAIPENYFPDNDPKKQP 273
>ref|NP_740137.1| NADH dehydrogenase subunit 5 [Petroscirtes breviceps]
gi|25006149|dbj|BAC23758.1| NADH dehydrogenase subunit 5
[Petroscirtes breviceps]
Length = 613
Score = 30.0 bits (66), Expect = 6.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -1
Query: 327 RHSFWVIFRCMTSLNYLIFGRYFFIDFVDDSLLQGCGISYMSPLYSFFPIL 175
+HS W + + MTS+ FFI + SL G M+ +S+FP+L
Sbjct: 32 KHSPWPLEKVMTSVKLA-----FFISLIPLSLFLNEGAQIMTTTWSWFPLL 77
>ref|NP_759585.1| Ubiquinol-cytochrome c reductase, cytochrome B [Vibrio vulnificus
CMCP6] gi|27360175|gb|AAO09112.1|AE016799_10
Ubiquinol-cytochrome c reductase, cytochrome B [Vibrio
vulnificus CMCP6]
Length = 421
Score = 29.6 bits (65), Expect = 8.9
Identities = 17/54 (31%), Positives = 25/54 (45%), Gaps = 5/54 (9%)
Frame = +2
Query: 38 DNSIQFKVHKSTINEYHMIQS*E*HEYGLNRNITNP-----YFYFYFHFSPRMG 184
D QFK H+ N+Y +I S H YG +++ F + F+P MG
Sbjct: 230 DYKTQFKFHEYYSNKYDIIDSIPFHPYGTVKDMVGVAGFLFLFCYVLFFNPEMG 283
>ref|NP_068647.1| cytochrome c oxidase subunit III [Triatoma dimidiata]
gi|11139103|gb|AAG31610.1|AF301594_3 cytochrome c
oxidase subunit 3 [Triatoma dimidiata]
Length = 261
Score = 29.6 bits (65), Expect = 8.9
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +3
Query: 102 RNDMSMD*IVISQILIFIFIFTSLQGWEKRNKEGTYMIYHNLARVN 239
+NDMS+ + + I + T +Q W +EGTY H LA N
Sbjct: 37 KNDMSL-----YLLGVLITVLTMIQWWRDITREGTYQGKHTLAVTN 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,512,262
Number of Sequences: 1393205
Number of extensions: 7456123
Number of successful extensions: 16272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16270
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
