Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014326A_C01 KMC014326A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM22702.1|AC098693_7 Hypothetical protein [Oryza sativa (jap... 121 5e-27
pir||A86297 hypothetical protein F3O9.2 - Arabidopsis thaliana g... 115 3e-25
ref|NP_563993.1| expressed protein; protein id: At1g16210.1, sup... 115 3e-25
ref|NP_612451.1| hypothetical protein BC013949 [Homo sapiens] gi... 89 4e-17
dbj|BAB25123.1| unnamed protein product [Mus musculus] 85 6e-16
>gb|AAM22702.1|AC098693_7 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 232
Score = 121 bits (304), Expect = 5e-27
Identities = 59/77 (76%), Positives = 67/77 (86%), Gaps = 1/77 (1%)
Frame = -3
Query: 571 IEARNLDDAIAQMSID-NSNLAPDRHPERRLKAAFKAFEEAELPKLKEEKPGLTYNQYRD 395
IEAR+++DAI +MSI L PDRHPERRLK ++KAFEEAEL KLKEEKPGLT +QY+D
Sbjct: 154 IEARSVEDAIVKMSIAAEPALPPDRHPERRLKVSYKAFEEAELAKLKEEKPGLTLHQYKD 213
Query: 394 MIWKLWKKSPDNPLNQV 344
MIWKLWKKSPDNPLNQV
Sbjct: 214 MIWKLWKKSPDNPLNQV 230
>pir||A86297 hypothetical protein F3O9.2 - Arabidopsis thaliana
gi|4966342|gb|AAD34673.1|AC006341_1 ESTs gb|T04357 and
gb|AA595092 come from this gene. [Arabidopsis thaliana]
Length = 230
Score = 115 bits (289), Expect = 3e-25
Identities = 51/77 (66%), Positives = 67/77 (86%)
Frame = -3
Query: 571 IEARNLDDAIAQMSIDNSNLAPDRHPERRLKAAFKAFEEAELPKLKEEKPGLTYNQYRDM 392
IEA +D+A+A++++ + NL DRHPE+RLKA+FKA+EE ELP+LK EKPGLT+ QY+D+
Sbjct: 149 IEAHTVDEALARITVSD-NLPVDRHPEKRLKASFKAYEEVELPRLKSEKPGLTHTQYKDL 207
Query: 391 IWKLWKKSPDNPLNQVA 341
IWK+WKKSPDNPLNQ A
Sbjct: 208 IWKMWKKSPDNPLNQAA 224
>ref|NP_563993.1| expressed protein; protein id: At1g16210.1, supported by cDNA:
114103., supported by cDNA: gi_18176163 [Arabidopsis
thaliana] gi|18176164|gb|AAL59995.1| unknown protein
[Arabidopsis thaliana] gi|21536880|gb|AAM61212.1|
unknown [Arabidopsis thaliana]
gi|21689681|gb|AAM67462.1| unknown protein [Arabidopsis
thaliana]
Length = 234
Score = 115 bits (289), Expect = 3e-25
Identities = 51/77 (66%), Positives = 67/77 (86%)
Frame = -3
Query: 571 IEARNLDDAIAQMSIDNSNLAPDRHPERRLKAAFKAFEEAELPKLKEEKPGLTYNQYRDM 392
IEA +D+A+A++++ + NL DRHPE+RLKA+FKA+EE ELP+LK EKPGLT+ QY+D+
Sbjct: 153 IEAHTVDEALARITVSD-NLPVDRHPEKRLKASFKAYEEVELPRLKSEKPGLTHTQYKDL 211
Query: 391 IWKLWKKSPDNPLNQVA 341
IWK+WKKSPDNPLNQ A
Sbjct: 212 IWKMWKKSPDNPLNQAA 228
>ref|NP_612451.1| hypothetical protein BC013949 [Homo sapiens]
gi|15530307|gb|AAH13949.1|AAH13949 Similar to RIKEN cDNA
1810023B24 gene [Homo sapiens]
Length = 223
Score = 89.0 bits (219), Expect = 4e-17
Identities = 41/77 (53%), Positives = 58/77 (75%)
Frame = -3
Query: 571 IEARNLDDAIAQMSIDNSNLAPDRHPERRLKAAFKAFEEAELPKLKEEKPGLTYNQYRDM 392
+EAR ++DAIA +S+ A DRHPERR++AAF AFEEA+LP+LK+E P + +Q + +
Sbjct: 142 VEARTIEDAIAVLSVAEE--AADRHPERRMRAAFTAFEEAQLPRLKQENPNMRLSQLKQL 199
Query: 391 IWKLWKKSPDNPLNQVA 341
+ K W +SPDNP+NQ A
Sbjct: 200 LKKEWLRSPDNPMNQRA 216
>dbj|BAB25123.1| unnamed protein product [Mus musculus]
Length = 217
Score = 85.1 bits (209), Expect = 6e-16
Identities = 39/77 (50%), Positives = 56/77 (72%)
Frame = -3
Query: 571 IEARNLDDAIAQMSIDNSNLAPDRHPERRLKAAFKAFEEAELPKLKEEKPGLTYNQYRDM 392
+EAR ++DAIA +S+ DRHPERR++AAF AFEE +LP+LK+E P + +Q + +
Sbjct: 137 VEARTVEDAIAVLSVAEE---ADRHPERRMRAAFTAFEEVQLPRLKQENPNMRLSQLKQL 193
Query: 391 IWKLWKKSPDNPLNQVA 341
+ K W +SPDNP+NQ A
Sbjct: 194 LKKEWLRSPDNPMNQRA 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,016,578
Number of Sequences: 1393205
Number of extensions: 7897721
Number of successful extensions: 17937
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 17532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17926
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
