Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014313A_C01 KMC014313A_c01
(429 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC56785.1| P0686C03.23 [Oryza sativa (japonica cultivar-gro... 127 4e-29
ref|NP_195529.1| putative protein; protein id: At4g38160.1, supp... 119 1e-26
pir||T01062 hypothetical protein YUP8H12R.46 - Arabidopsis thali... 74 3e-13
ref|NP_192208.1| hypothetical protein; protein id: At4g02990.1 [... 55 2e-07
gb|AAK55704.1|AF378901_1 AT4g02990/T4I9_13 [Arabidopsis thaliana... 55 2e-07
>dbj|BAC56785.1| P0686C03.23 [Oryza sativa (japonica cultivar-group)]
Length = 333
Score = 127 bits (318), Expect = 4e-29
Identities = 60/91 (65%), Positives = 72/91 (78%)
Frame = -2
Query: 428 FQDRQIVDLVVGFPPILIKSIQNFLEPRIKFLVNVMGRQVDEVVDYPCFFRHGLKKKLQL 249
F Q++ LV G+PP+LIKS+++ LEPR+KFLV MGR + EVVDYP FFRHGLK+ L+
Sbjct: 239 FSKDQVMALVAGYPPVLIKSVKHCLEPRMKFLVEEMGRDMGEVVDYPQFFRHGLKRSLEY 298
Query: 248 RPKFLKQRNLSCSLSEMLDCNEKKFQMKFGL 156
R K LKQ N CSLSEMLDCN+KKF MKFGL
Sbjct: 299 RHKVLKQMNSRCSLSEMLDCNQKKFAMKFGL 329
>ref|NP_195529.1| putative protein; protein id: At4g38160.1, supported by cDNA:
gi_20147356 [Arabidopsis thaliana]
gi|7485857|pir||T05643 hypothetical protein F20D10.280 -
Arabidopsis thaliana gi|4467122|emb|CAB37556.1| putative
protein [Arabidopsis thaliana]
gi|7270800|emb|CAB80481.1| putative protein [Arabidopsis
thaliana] gi|20147357|gb|AAM10391.1|
AT4g38160/F20D10_280 [Arabidopsis thaliana]
gi|23308295|gb|AAN18117.1| At4g38160/F20D10_280
[Arabidopsis thaliana]
Length = 333
Score = 119 bits (297), Expect = 1e-26
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = -2
Query: 428 FQDRQIVDLVVGFPPILIKSIQNFLEPRIKFLVNVMGRQVDEVVDYPCFFRHGLKKKLQL 249
F D QI +V G+P ILIKS++N L+PRI+FLV VMGR +DEV YP FF HGLKKK++
Sbjct: 236 FGDSQIATMVTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVES 295
Query: 248 RPKFLKQRNLSCSLSEMLDCNEKKFQMKFG 159
R K +K+ N+ CSL EMLDCN KKF KFG
Sbjct: 296 RFKLVKKNNIDCSLREMLDCNTKKFHEKFG 325
>pir||T01062 hypothetical protein YUP8H12R.46 - Arabidopsis thaliana
gi|3152591|gb|AAC17072.1| Similar to hypothetical
protein gb|Z97336 from A. thaliana. This gene is
probably cut off. [Arabidopsis thaliana]
Length = 600
Score = 74.3 bits (181), Expect = 3e-13
Identities = 36/87 (41%), Positives = 57/87 (65%)
Frame = -2
Query: 422 DRQIVDLVVGFPPILIKSIQNFLEPRIKFLVNVMGRQVDEVVDYPCFFRHGLKKKLQLRP 243
+R+I ++ F PIL SI L P+ +FLVN M + V EV++YP +F + L+K+++ R
Sbjct: 501 EREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRF 560
Query: 242 KFLKQRNLSCSLSEMLDCNEKKFQMKF 162
+ LK RN+ C+L EML N+++F F
Sbjct: 561 RVLKGRNIECTLQEMLGKNDEEFAADF 587
>ref|NP_192208.1| hypothetical protein; protein id: At4g02990.1 [Arabidopsis
thaliana] gi|7487645|pir||T01394 hypothetical protein
T4I9.13 - Arabidopsis thaliana gi|3924606|gb|AAC79107.1|
hypothetical protein [Arabidopsis thaliana]
gi|7269784|emb|CAB77784.1| hypothetical protein
[Arabidopsis thaliana]
Length = 541
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/88 (28%), Positives = 54/88 (60%)
Frame = -2
Query: 428 FQDRQIVDLVVGFPPILIKSIQNFLEPRIKFLVNVMGRQVDEVVDYPCFFRHGLKKKLQL 249
F Q ++V+G P +L ++ ++ ++ M R + ++VD+P FF +GL+ ++
Sbjct: 407 FSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKP 465
Query: 248 RPKFLKQRNLSCSLSEMLDCNEKKFQMK 165
R K + ++ + CSL+ ML+C+++KF+ +
Sbjct: 466 RHKKIIKKGIKCSLAWMLNCSDEKFEQR 493
>gb|AAK55704.1|AF378901_1 AT4g02990/T4I9_13 [Arabidopsis thaliana] gi|15450557|gb|AAK96456.1|
AT4g02990/T4I9_13 [Arabidopsis thaliana]
Length = 158
Score = 55.5 bits (132), Expect = 2e-07
Identities = 25/88 (28%), Positives = 54/88 (60%)
Frame = -2
Query: 428 FQDRQIVDLVVGFPPILIKSIQNFLEPRIKFLVNVMGRQVDEVVDYPCFFRHGLKKKLQL 249
F Q ++V+G P +L ++ ++ ++ M R + ++VD+P FF +GL+ ++
Sbjct: 24 FSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKP 82
Query: 248 RPKFLKQRNLSCSLSEMLDCNEKKFQMK 165
R K + ++ + CSL+ ML+C+++KF+ +
Sbjct: 83 RHKKIIKKGIKCSLAWMLNCSDEKFEQR 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,453,627
Number of Sequences: 1393205
Number of extensions: 6952002
Number of successful extensions: 15922
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 15586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15917
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
