Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014240A_C01 KMC014240A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192945.2| putative DNA-binding protein; protein id: At4g1... 99 3e-20
pir||T06615 hypothetical protein F16J13.150 - Arabidopsis thalia... 97 1e-19
ref|NP_194262.1| putative protein; protein id: At4g25320.1, supp... 92 4e-18
ref|NP_194008.1| putative DNA binding protein; protein id: At4g2... 91 6e-18
ref|NP_199972.1| putative protein; protein id: At5g51590.1 [Arab... 84 7e-16
>ref|NP_192945.2| putative DNA-binding protein; protein id: At4g12080.1, supported by
cDNA: gi_17979484 [Arabidopsis thaliana]
gi|17979485|gb|AAL50079.1| AT4g12080/F16J13_150
[Arabidopsis thaliana] gi|23506149|gb|AAN31086.1|
At4g12080/F16J13_150 [Arabidopsis thaliana]
Length = 356
Score = 99.0 bits (245), Expect = 3e-20
Identities = 75/172 (43%), Positives = 95/172 (54%), Gaps = 32/172 (18%)
Frame = +1
Query: 94 GISSGVTVIGAEAPSAYHVAPRSEAPNQVHV------PAPASAGTA-------------- 213
G G+TV+ ++APS +HVA RSE+ NQ P P+S TA
Sbjct: 17 GNDGGITVVRSDAPSDFHVAQRSESSNQSPTSVTPPPPQPSSHHTAPPPLQISTVTTTTT 76
Query: 214 -AAMVGSPVSVGLDVTIKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSN---------D 363
AAM G +S GL +KKKRGRPRKYGPDG V +ALSP PISS+ PS+ D
Sbjct: 77 TAAMEG--ISGGL---MKKKRGRPRKYGPDGTV-VALSPKPISSAPAPSHLPPPSSHVID 130
Query: 364 Y-ASGKRGKPRGM-EYKQSKEMGLDHHLGDLNACSDGTSFMPHIITVNAGED 513
+ AS KR K + + ++K +LG+ CS G +F PHIITVN GED
Sbjct: 131 FSASEKRSKVKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGED 182
>pir||T06615 hypothetical protein F16J13.150 - Arabidopsis thaliana
gi|4586113|emb|CAB40949.1| putative DNA-binding protein
[Arabidopsis thaliana] gi|7267909|emb|CAB78251.1|
putative DNA-binding protein [Arabidopsis thaliana]
Length = 365
Score = 96.7 bits (239), Expect = 1e-19
Identities = 74/171 (43%), Positives = 94/171 (54%), Gaps = 32/171 (18%)
Frame = +1
Query: 94 GISSGVTVIGAEAPSAYHVAPRSEAPNQVHV------PAPASAGTA-------------- 213
G G+TV+ ++APS +HVA RSE+ NQ P P+S TA
Sbjct: 13 GNDGGITVVRSDAPSDFHVAQRSESSNQSPTSVTPPPPQPSSHHTAPPPLQISTVTTTTT 72
Query: 214 -AAMVGSPVSVGLDVTIKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSN---------D 363
AAM G +S GL +KKKRGRPRKYGPDG V +ALSP PISS+ PS+ D
Sbjct: 73 TAAMEG--ISGGL---MKKKRGRPRKYGPDGTV-VALSPKPISSAPAPSHLPPPSSHVID 126
Query: 364 Y-ASGKRGKPRGM-EYKQSKEMGLDHHLGDLNACSDGTSFMPHIITVNAGE 510
+ AS KR K + + ++K +LG+ CS G +F PHIITVN GE
Sbjct: 127 FSASEKRSKVKPTNSFNRTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGE 177
>ref|NP_194262.1| putative protein; protein id: At4g25320.1, supported by cDNA:
gi_20466212 [Arabidopsis thaliana]
gi|7486058|pir||T05553 hypothetical protein F24A6.160 -
Arabidopsis thaliana gi|4454020|emb|CAA23073.1| putative
protein [Arabidopsis thaliana]
gi|7269383|emb|CAB81343.1| putative protein [Arabidopsis
thaliana] gi|20466213|gb|AAM20424.1| putative protein
[Arabidopsis thaliana] gi|28059577|gb|AAO30071.1|
putative protein [Arabidopsis thaliana]
Length = 404
Score = 92.0 bits (227), Expect = 4e-18
Identities = 66/178 (37%), Positives = 88/178 (49%), Gaps = 33/178 (18%)
Frame = +1
Query: 79 MEAREGISSGVTVIGAEAPSAYHVA------------PRSEAPNQVHVP---APASAGTA 213
ME REG + + + H A PR E PN VP PA+A A
Sbjct: 1 MEEREGTNINNNITSSFGLKQQHEAAASDGGYSMDPPPRPENPNPFLVPPTTVPAAATVA 60
Query: 214 AAMV---GSPVSVGLDVT------IKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSNDY 366
AA+ +P S+ + +KKKRGRPRKY PDG + + LSP+PISSSVP ++++
Sbjct: 61 AAVTENAATPFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSVPLTSEF 120
Query: 367 ASGKRGKPRGME---YKQSKEMGLDHHLGDLNACSDGT------SFMPHIITVNAGED 513
KRG+ RG K+S+ D D N GT +F PH++ VNAGED
Sbjct: 121 PPRKRGRGRGKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVNAGED 178
>ref|NP_194008.1| putative DNA binding protein; protein id: At4g22770.1, supported by
cDNA: 12041. [Arabidopsis thaliana]
gi|7486882|pir||T04572 hypothetical protein T12H17.160 -
Arabidopsis thaliana gi|2827554|emb|CAA16562.1| putative
DNA binding protein [Arabidopsis thaliana]
gi|7269124|emb|CAB79232.1| putative DNA binding protein
[Arabidopsis thaliana] gi|21537115|gb|AAM61456.1|
putative DNA binding protein [Arabidopsis thaliana]
Length = 334
Score = 91.3 bits (225), Expect = 6e-18
Identities = 69/156 (44%), Positives = 89/156 (56%), Gaps = 16/156 (10%)
Frame = +1
Query: 94 GISSGVTVIGAEAPSAYHVAPRSEA----PNQVHVPAPA----SAGTAAAMVGSPVSVGL 249
G GVTV+ + APS +H+APRSE PN V P P S +AAM G S G
Sbjct: 13 GSDGGVTVVRSNAPSDFHMAPRSETSNTPPNSVAPPPPPPPQNSFTPSAAMDG--FSSG- 69
Query: 250 DVTIKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSN---DYA--SGKRGKPRGMEYKQS 414
IKK+RGRPRKYG DG ++ LSP PISS+ P ++ D++ S KRGK + S
Sbjct: 70 --PIKKRRGRPRKYGHDG-AAVTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPS 126
Query: 415 KEMGLDH---HLGDLNACSDGTSFMPHIITVNAGED 513
+ + +LG+ + S +F PHIITVNAGED
Sbjct: 127 SFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGED 162
>ref|NP_199972.1| putative protein; protein id: At5g51590.1 [Arabidopsis thaliana]
gi|9758201|dbj|BAB08675.1| contains similarity to
DNA-binding protein~gene_id:K17N15.14 [Arabidopsis
thaliana]
Length = 419
Score = 84.3 bits (207), Expect = 7e-16
Identities = 66/192 (34%), Positives = 92/192 (47%), Gaps = 47/192 (24%)
Frame = +1
Query: 79 MEAREG--ISSGVTVIGAEA------PSAYHVAPRSEAPNQVHVPAPASAGTAAAM---- 222
ME REG I++ T G + P Y PRSE PN V +++ AAA+
Sbjct: 1 MEEREGTNINNIPTSFGLKQHETPLPPPGY--PPRSENPNLFPVGQSSTSSAAAAVKPSE 58
Query: 223 -VGSPVSVGLDVT-----IKKKRGRPRKYGPDGPVSMALSPLPISSSVPPSNDYASGKRG 384
V P S+ + V +KKKRGRPRKY PDG +++ LSP+PISSSVP ++++ S KRG
Sbjct: 59 NVAPPFSLTMPVENSSSELKKKRGRPRKYNPDGSLAVTLSPMPISSSVPLTSEFGSRKRG 118
Query: 385 KPRGMEYKQSKEMGLDHHLGDLNACSDGT-----------------------------SF 477
+ RG + + G + N ++ SF
Sbjct: 119 RGRGRGRGRGRGRGQGQGSREPNNNNNDNNWLKNPQMFEFNNNTPTSGGGGPAEIVSPSF 178
Query: 478 MPHIITVNAGED 513
PH++TVNAGED
Sbjct: 179 TPHVLTVNAGED 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,270,512
Number of Sequences: 1393205
Number of extensions: 12100415
Number of successful extensions: 40394
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 36621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40021
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
