Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014237A_C01 KMC014237A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_473022.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.9
gb|EAA17780.1| hypothetical protein [Plasmodium yoelii yoelii] 32 6.5
ref|NP_705134.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.5
ref|NP_645134.1| conserved hypothetical protein [Staphylococcus ... 31 8.5
ref|NP_370865.1| conserved hypothetical protein [Staphylococcus ... 31 8.5
>ref|NP_473022.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494295|pir||G71613 hypothetical protein PFB0470w -
malaria parasite (Plasmodium falciparum)
gi|3845193|gb|AAC71883.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1346
Score = 32.7 bits (73), Expect = 2.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -2
Query: 146 YLFCYFVVVFLEVNYGFLSLRNF*I---ILFFSVLKNHTVLFSIKEYVYFH 3
Y C+F+ L+ NY +LS+ N + IL + NH + +SI EY+ H
Sbjct: 798 YALCFFI---LKENYYYLSIDNLYLYLEILHRMKIYNHDIFYSIMEYINTH 845
>gb|EAA17780.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 95
Score = 31.6 bits (70), Expect = 6.5
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -2
Query: 149 HYLFCYFVVVFLEVNYGFLSLRNF*IILFFSVLKNHTVLF---SIKEYVY 9
+Y+F YF+ + ++ F ++ + I+ F+ KN +F IKEY+Y
Sbjct: 29 YYIFHYFIKTHISSHFPFYNIFSDIIVHFYIFYKNDNAVFYCSRIKEYIY 78
>ref|NP_705134.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615379|emb|CAD52370.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1510
Score = 31.2 bits (69), Expect = 8.5
Identities = 15/41 (36%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = +3
Query: 9 INILLYREKNSMIF*NRKEQYNLEISQGKKTII--HF*ENY 125
I+ + Y EKN++ F N+K++ N Q +T++ HF EN+
Sbjct: 804 ISPIYYEEKNNIQFINKKKETNTNNIQNNETVVNNHFSENF 844
>ref|NP_645134.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2] gi|21203482|dbj|BAB94182.1| conserved hypothetical
protein [Staphylococcus aureus subsp. aureus MW2]
Length = 331
Score = 31.2 bits (69), Expect = 8.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -3
Query: 340 VSIIIIYYLLLIMLLINKFIHGDRNI 263
+ + ++ + +++ML +NK +HGD+NI
Sbjct: 96 IDVGVVIFSIVMMLFVNKLLHGDKNI 121
>ref|NP_370865.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50] gi|15926042|ref|NP_373575.1| conserved
hypothetical protein [Staphylococcus aureus subsp.
aureus N315] gi|25347662|pir||F89799 conserved
hypothetical protein SA0329 [imported] - Staphylococcus
aureus (strain N315) gi|13700255|dbj|BAB41553.1|
conserved hypothetical protein [Staphylococcus aureus
subsp. aureus N315] gi|14246109|dbj|BAB56503.1|
conserved hypothetical protein [Staphylococcus aureus
subsp. aureus Mu50]
Length = 331
Score = 31.2 bits (69), Expect = 8.5
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = -3
Query: 340 VSIIIIYYLLLIMLLINKFIHGDRNI 263
+ + ++ + +++ML +NK +HGD+NI
Sbjct: 96 IDVGVVIFSIVMMLFVNKLLHGDKNI 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,801,518
Number of Sequences: 1393205
Number of extensions: 7612455
Number of successful extensions: 14037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14032
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
