Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014198A_C01 KMC014198A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05841 spliceosome-associated protein homolog F17L22.120 - ... 64 2e-14
ref|NP_193897.1| spliceosome associated protein - like; protein ... 64 2e-14
gb|AAN72024.1| spliceosome associated protein - like [Arabidopsi... 62 3e-09
ref|NP_594733.1| putative human spliceosome associated protein 1... 50 2e-05
ref|NP_608739.1| CG3605-PA [Drosophila melanogaster] gi|16769632... 44 0.001
>pir||T05841 spliceosome-associated protein homolog F17L22.120 - Arabidopsis
thaliana gi|4455274|emb|CAB36810.1| spliceosome
associated protein-like [Arabidopsis thaliana]
gi|7268963|emb|CAB81273.1| spliceosome associated
protein-like [Arabidopsis thaliana]
Length = 700
Score = 63.9 bits (154), Expect(2) = 2e-14
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = -3
Query: 323 IFQVWDATASDPKLLGFLKSYSYTVPMPRHWSQKRVFAGERL 198
+ +VWDAT++DPKLL FLKSY TVP+PRHWSQKR + E +
Sbjct: 173 VVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQENI 214
Score = 35.8 bits (81), Expect(2) = 2e-14
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 226 RREFLQGRGCGYYQAWTCRCLAMGILELFVFYYLLY 119
+R++LQ C + AWTCRC G+L +F++ LY
Sbjct: 206 KRKYLQENICDNHGAWTCRCNRRGLL---IFFFCLY 238
>ref|NP_193897.1| spliceosome associated protein - like; protein id: At4g21660.1
[Arabidopsis thaliana]
Length = 669
Score = 63.9 bits (154), Expect(2) = 2e-14
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = -3
Query: 323 IFQVWDATASDPKLLGFLKSYSYTVPMPRHWSQKRVFAGERL 198
+ +VWDAT++DPKLL FLKSY TVP+PRHWSQKR + E +
Sbjct: 173 VVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKYLQENI 214
Score = 35.8 bits (81), Expect(2) = 2e-14
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 226 RREFLQGRGCGYYQAWTCRCLAMGILELFVFYYLLY 119
+R++LQ C + AWTCRC G+L +F++ LY
Sbjct: 206 KRKYLQENICDNHGAWTCRCNRRGLL---IFFFCLY 238
>gb|AAN72024.1| spliceosome associated protein - like [Arabidopsis thaliana]
Length = 584
Score = 62.4 bits (150), Expect = 3e-09
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = -3
Query: 323 IFQVWDATASDPKLLGFLKSYSYTVPMPRHWSQKRVF 213
+ +VWDAT++DPKLL FLKSY TVP+PRHWSQKR +
Sbjct: 177 VVEVWDATSADPKLLVFLKSYRNTVPVPRHWSQKRKY 213
>ref|NP_594733.1| putative human spliceosome associated protein 145 (SAP 145)
homologue [Schizosaccharomyces pombe]
gi|7493427|pir||T38200 spliceosome associated protein
145 (SAP 145) homolog - fission yeast
(Schizosaccharomyces pombe) gi|5734487|emb|CAB52720.1|
putative human spliceosome associated protein 145 (SAP
145) homologue [Schizosaccharomyces pombe]
Length = 601
Score = 49.7 bits (117), Expect = 2e-05
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Frame = -3
Query: 359 MAILDMLGSFFFIFQVWDATASDPKLLGFLKSYSYTVPMPRHWSQKRVF-AGER-----L 198
+A L ML + + WD ++ DP L LK+Y TVP+PRHW+QKR + +G+R L
Sbjct: 189 VAQLKMLSEKADVVEWWDVSSLDPLFLTHLKAYPNTVPVPRHWNQKRDYLSGQRGIERQL 248
Query: 197 WLLPS 183
+ LPS
Sbjct: 249 FELPS 253
>ref|NP_608739.1| CG3605-PA [Drosophila melanogaster] gi|16769632|gb|AAL29035.1|
LD45152p [Drosophila melanogaster]
gi|22945358|gb|AAF51159.2| CG3605-PA [Drosophila
melanogaster]
Length = 749
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/54 (46%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Frame = -3
Query: 323 IFQVWDATASDPKLLGFLKSYSYTVPMPRHWSQKRVF-AGERLWLLPSLDL*VF 165
+ ++ D TA DPKLL LK+Y TV +PRHW KR + G+R P DL F
Sbjct: 324 VVEMHDVTARDPKLLVQLKAYRNTVQVPRHWCFKRKYLQGKRGIEKPPFDLPAF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,908,839
Number of Sequences: 1393205
Number of extensions: 11144389
Number of successful extensions: 25167
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 24092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25163
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
