Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014152A_C01 KMC014152A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190673.1| putative protein; protein id: At3g51040.1, supp... 36 0.30
gb|AAM64703.1| unknown [Arabidopsis thaliana] 36 0.30
ref|NP_703385.1| P-type ATPase, putative [Plasmodium falciparum ... 35 0.89
ref|NP_503796.1| Predicted CDS, serpentine Receptor, class H SRH... 32 5.7
pir||T31976 hypothetical protein D2062.10 - Caenorhabditis elegans 32 7.5
>ref|NP_190673.1| putative protein; protein id: At3g51040.1, supported by cDNA:
32231., supported by cDNA: gi_15027928, supported by
cDNA: gi_20259170 [Arabidopsis thaliana]
gi|11357634|pir||T45735 hypothetical protein F24M12.80 -
Arabidopsis thaliana gi|6562256|emb|CAB62626.1| putative
protein [Arabidopsis thaliana]
gi|15027929|gb|AAK76495.1| unknown protein [Arabidopsis
thaliana] gi|20259171|gb|AAM14301.1| unknown protein
[Arabidopsis thaliana]
Length = 231
Score = 36.2 bits (82), Expect = 0.30
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = -2
Query: 333 RSSMDFPPTSHAMSYINKCHQIINNSSGLMIVKWGWWNVVNSVNCVALFYFFTLKLLYVK 154
+S+ ++ S+ + N CH + N+ + +K G WNVVN V + K VK
Sbjct: 125 KSTQEYQHHSYNILTCN-CHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTAIVK 183
Query: 153 IIRPPLRKFSYSWILCYNVVNVHFIVWCCYIILLI 49
+ PPL ++ +L FI C +++L+
Sbjct: 184 SLLPPLIVYTIGILL----GGWTFIASCSILVVLL 214
>gb|AAM64703.1| unknown [Arabidopsis thaliana]
Length = 212
Score = 36.2 bits (82), Expect = 0.30
Identities = 25/95 (26%), Positives = 44/95 (46%)
Frame = -2
Query: 333 RSSMDFPPTSHAMSYINKCHQIINNSSGLMIVKWGWWNVVNSVNCVALFYFFTLKLLYVK 154
+S+ ++ S+ + N CH + N+ + +K G WNVVN V + K VK
Sbjct: 106 KSTQEYQHHSYNILTCN-CHSFVANNLNRLSIKSGGWNVVNLATLVLFKGRWVNKTAIVK 164
Query: 153 IIRPPLRKFSYSWILCYNVVNVHFIVWCCYIILLI 49
+ PPL ++ +L FI C +++L+
Sbjct: 165 SLLPPLIVYTIGILL----GGWTFIASCSILVVLL 195
>ref|NP_703385.1| P-type ATPase, putative [Plasmodium falciparum 3D7]
gi|23504525|emb|CAD51405.1| P-type ATPase, putative
[Plasmodium falciparum 3D7]
Length = 2393
Score = 34.7 bits (78), Expect = 0.89
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 212 IQLIVSLYFISLP*NYYMSKSSGLLLGNFRIAGFFVIMLLTFISSYGAVT 63
+ L+ I L N Y K +G +L N R FF+ +LL FI +YG +T
Sbjct: 102 LYLLTHFIIILLIGNEYCIKENGEILWNDRAFVFFIFLLLCFIITYGILT 151
>ref|NP_503796.1| Predicted CDS, serpentine Receptor, class H SRH-247 (srh-247)
[Caenorhabditis elegans] gi|7496767|pir||T32174
hypothetical protein C31B8.13 - Caenorhabditis elegans
gi|10864265|gb|AAG23979.1| Serpentine receptor, class h
protein 247 [Caenorhabditis elegans]
Length = 325
Score = 32.0 bits (71), Expect = 5.7
Identities = 17/49 (34%), Positives = 30/49 (60%), Gaps = 1/49 (2%)
Frame = -2
Query: 246 MIVKWGWWNVVNSVNCVALFYFFTLKLLYVKI-IRPPLRKFSYSWILCY 103
++V W + V+N++ C+ +F F L+ V I + P R+F+ S ILC+
Sbjct: 261 VVVFWYYNQVLNNIMCL-MFSMFGLETCVVMILVHKPYREFAISLILCF 308
>pir||T31976 hypothetical protein D2062.10 - Caenorhabditis elegans
Length = 311
Score = 31.6 bits (70), Expect = 7.5
Identities = 22/62 (35%), Positives = 32/62 (51%)
Frame = -2
Query: 234 WGWWNVVNSVNCVALFYFFTLKLLYVKIIRPPLRKFSYSWILCYNVVNVHFIVWCCYIIL 55
+ W+ +S+N V+LF FF Y KII L+ ++S L + VV +I YI L
Sbjct: 169 FAWFASHSSINMVSLFIFFP---PYRKIIAKGLKNITHSCFLVFVVVVSLYIYIYIYISL 225
Query: 54 LI 49
I
Sbjct: 226 TI 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,497,202
Number of Sequences: 1393205
Number of extensions: 10355637
Number of successful extensions: 24507
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24505
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
