Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014115A_C01 KMC014115A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50968.1|AC073395_10 hypothetical protein; 91861-89496 [Ara... 40 0.015
ref|NP_187741.2| hypothetical protein; protein id: At3g11330.1, ... 40 0.015
ref|NP_196204.1| putative protein; protein id: At5g05850.1 [Arab... 35 0.64
ref|NP_061234.1| protocadherin 7; BH-protocadherin; BH-protocadh... 33 1.9
ref|NP_115833.1| protocadherin 7, isoform c precursor; BH-pcdh; ... 33 2.4
>gb|AAG50968.1|AC073395_10 hypothetical protein; 91861-89496 [Arabidopsis thaliana]
Length = 537
Score = 40.4 bits (93), Expect = 0.015
Identities = 21/47 (44%), Positives = 28/47 (58%)
Frame = -3
Query: 557 EQGEGGWLTRSTSWLKNVSGNVIGYIGAVGSPMSPKSPRDAFLDQQL 417
EQ GWLTR+TS LK +V Y+G+ SPRD +L++QL
Sbjct: 498 EQANAGWLTRTTSKLKTYVADVSEYLGS-------NSPRDPYLERQL 537
>ref|NP_187741.2| hypothetical protein; protein id: At3g11330.1, supported by cDNA:
gi_18175637 [Arabidopsis thaliana]
gi|18175638|gb|AAL59901.1| unknown protein [Arabidopsis
thaliana] gi|21689861|gb|AAM67491.1| unknown protein
[Arabidopsis thaliana]
Length = 499
Score = 40.4 bits (93), Expect = 0.015
Identities = 21/47 (44%), Positives = 28/47 (58%)
Frame = -3
Query: 557 EQGEGGWLTRSTSWLKNVSGNVIGYIGAVGSPMSPKSPRDAFLDQQL 417
EQ GWLTR+TS LK +V Y+G+ SPRD +L++QL
Sbjct: 460 EQANAGWLTRTTSKLKTYVADVSEYLGS-------NSPRDPYLERQL 499
>ref|NP_196204.1| putative protein; protein id: At5g05850.1 [Arabidopsis thaliana]
gi|9759110|dbj|BAB09679.1|
gene_id:MJJ3.27~pir||T12704~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 506
Score = 35.0 bits (79), Expect = 0.64
Identities = 20/47 (42%), Positives = 25/47 (52%)
Frame = -3
Query: 557 EQGEGGWLTRSTSWLKNVSGNVIGYIGAVGSPMSPKSPRDAFLDQQL 417
+Q WLTR+TS LK V Y+G+ PRD +LDQQL
Sbjct: 467 DQTNTDWLTRTTSKLKTYVTEVSEYLGS-------NPPRDPYLDQQL 506
>ref|NP_061234.1| protocadherin 7; BH-protocadherin; BH-protocadherin (brain-heart)
[Mus musculus] gi|7513604|pir||T00043 BH-protocadherin-a
- mouse gi|3513312|dbj|BAA32597.1| BH-protocadherin-a
[Mus musculus]
Length = 1069
Score = 33.5 bits (75), Expect = 1.9
Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = -2
Query: 273 AGVLKTNSTE-VEVINTYKIK*GKSFNLYGIDRYSG*IMIRKDAMPKHYGLFSMVIMV 103
A VL T+S + + Y I G F L+ ID SG + + KHYGL +V+ V
Sbjct: 764 ATVLATDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQV 821
>ref|NP_115833.1| protocadherin 7, isoform c precursor; BH-pcdh; brain-heart
protocadherin; BH-protocadherin (brain-heart) [Homo
sapiens]
Length = 1200
Score = 33.1 bits (74), Expect = 2.4
Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = -2
Query: 273 AGVLKTNSTE-VEVINTYKIK*GKSFNLYGIDRYSG*IMIRKDAMPKHYGLFSMVIMV 103
A VL T+S + + Y I G F L+ ID SG + + KHYGL +V+ V
Sbjct: 717 ATVLATDSDDGINADLNYSIVGGNPFKLFEIDPTSGVVSLVGKLTQKHYGLHRLVVQV 774
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,484,192
Number of Sequences: 1393205
Number of extensions: 8570847
Number of successful extensions: 22917
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 22234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22904
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
