Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014098A_C01 KMC014098A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG21398.1|AF302929_1 Na+/K+ ATPase beta 3 subunit [Oryctolag... 34 1.3
ref|NP_001670.1| ATPase, Na+/K+ transporting, beta 3 polypeptide... 33 1.8
sp|P33879|ATND_CHICK Sodium/potassium-transporting ATPase beta-3... 33 1.8
ref|NP_037045.1| ATPase, Na+K+ transporting, beta polypeptide 3 ... 33 3.0
sp|Q60489|ATND_CAVPO Sodium/potassium-transporting ATPase beta-3... 33 3.0
>gb|AAG21398.1|AF302929_1 Na+/K+ ATPase beta 3 subunit [Oryctolagus cuniculus]
Length = 279
Score = 33.9 bits (76), Expect = 1.3
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = -1
Query: 381 GFTAAAMGLVLPLFLCFLFFSFSLLIFTLWILVLDERTKLPK 256
G TA + GL+L +L F F +L FT+W+++ ++PK
Sbjct: 30 GRTAKSWGLILLFYLVFYGFLAALFTFTMWVMLQTLNDEVPK 71
>ref|NP_001670.1| ATPase, Na+/K+ transporting, beta 3 polypeptide [Homo sapiens]
gi|1703470|sp|P54709|ATND_HUMAN
Sodium/potassium-transporting ATPase beta-3 chain
(Sodium/potassium-dependent ATPase beta-3 subunit)
(ATPB-3) gi|7447989|pir||G02485 Na+/K+-exchanging ATPase
(EC 3.6.1.-) beta-3 chain - human
gi|1256802|gb|AAC50665.1| sodium/potassium-transporting
ATPase beta-3 subunit [Homo sapiens]
gi|2224939|gb|AAB61713.1| Na K-ATPase beta-3 subunit
[Homo sapiens] gi|15080119|gb|AAH11835.1|AAH11835
Similar to ATPase, Na+/K+ transporting, beta 3
polypeptide [Homo sapiens]
Length = 279
Score = 33.5 bits (75), Expect = 1.8
Identities = 15/42 (35%), Positives = 25/42 (58%)
Frame = -1
Query: 381 GFTAAAMGLVLPLFLCFLFFSFSLLIFTLWILVLDERTKLPK 256
G TA + GL+L +L F F +L FT+W+++ ++PK
Sbjct: 30 GRTAKSWGLILLFYLVFYGFLAALFSFTMWVMLQTLNDEVPK 71
>sp|P33879|ATND_CHICK Sodium/potassium-transporting ATPase beta-3 chain
(Sodium/potassium-dependent ATPase beta-3 subunit)
gi|2134270|pir||I50396 (Na+,K+)-ATPase-beta-2 subunit -
chicken gi|289819|gb|AAA02625.1| (Na+,K+)-ATPase-beta-2
subunit
Length = 280
Score = 33.5 bits (75), Expect = 1.8
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = -1
Query: 381 GFTAAAMGLVLPLFLCFLFFSFSLLIFTLWILVLDERTKLPK 256
G TA + GL+L +L F F +L FT+W+++ +PK
Sbjct: 30 GRTAKSWGLILLFYLVFYGFLAALFTFTMWVMLQTLSNDIPK 71
>ref|NP_037045.1| ATPase, Na+K+ transporting, beta polypeptide 3 [Rattus norvegicus]
gi|3121778|sp|Q63377|ATND_RAT
Sodium/potassium-transporting ATPase beta-3 chain
(Sodium/potassium-dependent ATPase beta-3 subunit)
(ATPB-3) gi|1304199|dbj|BAA12668.1| Na+,K+-ATPase beta-3
subunit [Rattus norvegicus]
Length = 279
Score = 32.7 bits (73), Expect = 3.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 381 GFTAAAMGLVLPLFLCFLFFSFSLLIFTLWILVLDERTKLPK 256
G T+ + GL+L +L F F +L FT+W+++ ++PK
Sbjct: 30 GRTSKSWGLILLFYLVFYGFLAALFTFTMWVMLQTLNDEVPK 71
>sp|Q60489|ATND_CAVPO Sodium/potassium-transporting ATPase beta-3 chain
(Sodium/potassium-dependent ATPase beta-3 subunit)
(ATPB-3) gi|1304088|dbj|BAA12665.1| Na+,K+-ATPase beta-3
subunit [Cavia porcellus]
Length = 279
Score = 32.7 bits (73), Expect = 3.0
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = -1
Query: 381 GFTAAAMGLVLPLFLCFLFFSFSLLIFTLWILVLDERTKLPK 256
G TA + GL+L +L F F +L FT+W ++ ++PK
Sbjct: 30 GRTAKSWGLILLFYLVFYGFLAALFTFTMWAMLQTLNDEIPK 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,076,395
Number of Sequences: 1393205
Number of extensions: 10671066
Number of successful extensions: 33162
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32965
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
