Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014095A_C01 KMC014095A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplast precursor (... 179 2e-44
ref|NP_194713.1| threonine synthase; protein id: At4g29840.1 [Ar... 173 2e-42
gb|AAB04607.1| threonine synthase 173 2e-42
pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabido... 162 5e-39
ref|NP_565047.1| threonine synthase, putative; protein id: At1g7... 162 5e-39
>sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplast precursor (TS)
gi|8439547|gb|AAF74984.1|AF082894_1 threonine synthase
[Solanum tuberosum]
Length = 519
Score = 179 bits (455), Expect = 2e-44
Identities = 89/103 (86%), Positives = 93/103 (89%)
Frame = -3
Query: 657 TEEELMDAMAQADSTGMFACPHTGVALAALFKLRNSGVIKPTDRTVVVSTAHGLKFTQSK 478
TEEELMDAMAQADSTGMF CPHTGVAL ALFKLRNSGVI PTDRTVVVSTAHGLKFTQSK
Sbjct: 416 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIAPTDRTVVVSTAHGLKFTQSK 475
Query: 477 IDYHSGHIKDMACQFANPPLQVKADFGSVMDVLKKYLKSKAPK 349
IDYHS IKDM C+FANPP++VKADFGSVMDVLK YL S+ K
Sbjct: 476 IDYHSKEIKDMECRFANPPVEVKADFGSVMDVLKSYLLSQNSK 518
>ref|NP_194713.1| threonine synthase; protein id: At4g29840.1 [Arabidopsis thaliana]
gi|20140904|sp|Q9S7B5|THRC_ARATH Threonine synthase,
chloroplast precursor (TS) gi|7488373|pir||T08545
threonine synthase (EC 4.2.3.1) precursor - Arabidopsis
thaliana gi|4850369|dbj|BAA77707.1| threonine synthase
[Arabidopsis thaliana] gi|4914408|emb|CAB43659.1|
threonine synthase [Arabidopsis thaliana]
gi|7269883|emb|CAB79742.1| threonine synthase
[Arabidopsis thaliana]
Length = 526
Score = 173 bits (439), Expect = 2e-42
Identities = 85/99 (85%), Positives = 89/99 (89%)
Frame = -3
Query: 657 TEEELMDAMAQADSTGMFACPHTGVALAALFKLRNSGVIKPTDRTVVVSTAHGLKFTQSK 478
TEEELMDAMAQADSTGMF CPHTGVAL ALFKLRN GVI PTDRTVVVSTAHGLKFTQSK
Sbjct: 423 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 482
Query: 477 IDYHSGHIKDMACQFANPPLQVKADFGSVMDVLKKYLKS 361
IDYHS I DMAC+F+NPP+ VKADFG+VMDVLK YL S
Sbjct: 483 IDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 521
>gb|AAB04607.1| threonine synthase
Length = 525
Score = 173 bits (439), Expect = 2e-42
Identities = 85/99 (85%), Positives = 89/99 (89%)
Frame = -3
Query: 657 TEEELMDAMAQADSTGMFACPHTGVALAALFKLRNSGVIKPTDRTVVVSTAHGLKFTQSK 478
TEEELMDAMAQADSTGMF CPHTGVAL ALFKLRN GVI PTDRTVVVSTAHGLKFTQSK
Sbjct: 422 TEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 481
Query: 477 IDYHSGHIKDMACQFANPPLQVKADFGSVMDVLKKYLKS 361
IDYHS I DMAC+F+NPP+ VKADFG+VMDVLK YL S
Sbjct: 482 IDYHSNAIPDMACRFSNPPVDVKADFGAVMDVLKSYLGS 520
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
gi|15825883|pdb|1E5X|B Chain B, Structure Of Threonine
Synthase From Arabidopsis Thaliana
Length = 486
Score = 162 bits (409), Expect = 5e-39
Identities = 80/99 (80%), Positives = 84/99 (84%)
Frame = -3
Query: 657 TEEELMDAMAQADSTGMFACPHTGVALAALFKLRNSGVIKPTDRTVVVSTAHGLKFTQSK 478
TEEEL DA AQADSTG F CPHTGVAL ALFKLRN GVI PTDRTVVVSTAHGLKFTQSK
Sbjct: 383 TEEELXDAXAQADSTGXFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSK 442
Query: 477 IDYHSGHIKDMACQFANPPLQVKADFGSVMDVLKKYLKS 361
IDYHS I D AC+F+NPP+ VKADFG+V DVLK YL S
Sbjct: 443 IDYHSNAIPDXACRFSNPPVDVKADFGAVXDVLKSYLGS 481
>ref|NP_565047.1| threonine synthase, putative; protein id: At1g72810.1, supported by
cDNA: gi_20466325 [Arabidopsis thaliana]
gi|25406213|pir||A96753 probable threonine synthase
[imported] - Arabidopsis thaliana
gi|5903070|gb|AAD55628.1|AC008017_1 Putative threonine
synthase [Arabidopsis thaliana]
gi|20466326|gb|AAM20480.1| threonine synthase, putative
[Arabidopsis thaliana] gi|25084052|gb|AAN72162.1|
threonine synthase, putative [Arabidopsis thaliana]
Length = 516
Score = 162 bits (409), Expect = 5e-39
Identities = 81/99 (81%), Positives = 87/99 (87%)
Frame = -3
Query: 657 TEEELMDAMAQADSTGMFACPHTGVALAALFKLRNSGVIKPTDRTVVVSTAHGLKFTQSK 478
TEEELMDA A ADSTGMF CPHTGVAL AL KLR SGVI DRTVVVSTAHGLKFTQSK
Sbjct: 415 TEEELMDATALADSTGMFICPHTGVALTALMKLRKSGVIGANDRTVVVSTAHGLKFTQSK 474
Query: 477 IDYHSGHIKDMACQFANPPLQVKADFGSVMDVLKKYLKS 361
IDYHS +IK+MAC+ ANPP++VKA FGSVMDVLK+YLKS
Sbjct: 475 IDYHSKNIKEMACRLANPPVKVKAKFGSVMDVLKEYLKS 513
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,068,294
Number of Sequences: 1393205
Number of extensions: 12120300
Number of successful extensions: 33875
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 32415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33841
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
