Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014030A_C01 KMC014030A_c01
(493 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09117 multisubunit regulator protein COP9 - spinach gi|125... 105 4e-22
ref|NP_193147.1| COP9 protein; protein id: At4g14110.1, supporte... 94 6e-19
dbj|BAC43138.1| putative COP9 protein [Arabidopsis thaliana] 85 4e-16
ref|XP_237387.1| similar to COP9 signalosome subunit 8 [Mus musc... 41 0.006
ref|NP_066227.2|ND6_15504 NADH dehydrogenase subunit 6 [Fasciola... 36 0.26
>pir||T09117 multisubunit regulator protein COP9 - spinach
gi|1256771|gb|AAA96516.1| COP9
Length = 204
Score = 105 bits (261), Expect = 4e-22
Identities = 49/59 (83%), Positives = 56/59 (94%)
Frame = -1
Query: 490 ALFLGMNEDDATSYVQQQGWTVDSASRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 314
ALFLGM+ED+AT+YV Q+GW +DSA+RMLTVKKQ +VTEQKLDPSKLQRLTEYVFHLEH
Sbjct: 146 ALFLGMSEDEATTYVLQEGWILDSAARMLTVKKQTIVTEQKLDPSKLQRLTEYVFHLEH 204
>ref|NP_193147.1| COP9 protein; protein id: At4g14110.1, supported by cDNA:
gi_18056672, supported by cDNA: gi_530869 [Arabidopsis
thaliana] gi|1169013|sp|P43255|COP9_ARATH COP9 protein
(FUSCA protein FUS7) gi|625971|pir||A54842 COP9 protein
- Arabidopsis thaliana gi|530870|gb|AAA32773.1| CSN8
[Arabidopsis thaliana] gi|2244767|emb|CAB10190.1| COP9
protein [Arabidopsis thaliana]
gi|7268116|emb|CAB78453.1| COP9 protein [Arabidopsis
thaliana] gi|18056673|gb|AAL58110.1|AF395067_1 CSN
complex subunit 8 [Arabidopsis thaliana]
Length = 197
Score = 94.4 bits (233), Expect = 6e-19
Identities = 45/59 (76%), Positives = 51/59 (86%)
Frame = -1
Query: 490 ALFLGMNEDDATSYVQQQGWTVDSASRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 314
ALFLGM EDDAT+YV + GWTVD+AS+M +VKKQ V EQK+D SKLQRLTEYVFHLEH
Sbjct: 139 ALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVFHLEH 197
>dbj|BAC43138.1| putative COP9 protein [Arabidopsis thaliana]
Length = 54
Score = 85.1 bits (209), Expect = 4e-16
Identities = 40/54 (74%), Positives = 46/54 (85%)
Frame = -1
Query: 475 MNEDDATSYVQQQGWTVDSASRMLTVKKQPVVTEQKLDPSKLQRLTEYVFHLEH 314
M EDDAT+YV + GWTVD+AS+M +VKKQ V EQK+D SKLQRLTEYVFHLEH
Sbjct: 1 MTEDDATTYVVENGWTVDAASQMASVKKQAVKREQKVDSSKLQRLTEYVFHLEH 54
>ref|XP_237387.1| similar to COP9 signalosome subunit 8 [Mus musculus] [Rattus
norvegicus]
Length = 258
Score = 41.2 bits (95), Expect = 0.006
Identities = 22/60 (36%), Positives = 35/60 (57%), Gaps = 1/60 (1%)
Frame = -1
Query: 490 ALFLGMNEDDATSYVQQQGWTVDSASRMLTVKK-QPVVTEQKLDPSKLQRLTEYVFHLEH 314
A F+G+ ++A V +QGW DS +RM+ +K +P + +L RLT+YV LE+
Sbjct: 199 AAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPEPAPVPPIPNEQQLARLTDYVAFLEN 258
>ref|NP_066227.2|ND6_15504 NADH dehydrogenase subunit 6 [Fasciola hepatica]
gi|12248352|gb|AAG13155.2| NADH dehydrogenase subunit 6
[Fasciola hepatica]
Length = 150
Score = 35.8 bits (81), Expect = 0.26
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -1
Query: 280 FIF*SLPFECDKSYFLCSS-KCMEVCTFCFIIL 185
F+F S+P CD S++LCSS + + C FC +++
Sbjct: 100 FVFFSVPSLCDSSFYLCSSFEGLSYCLFCLVLM 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,146,993
Number of Sequences: 1393205
Number of extensions: 6978539
Number of successful extensions: 17324
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17320
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
