Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013995A_C01 KMC013995A_c01
(731 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084781.1| ATP synthase CF1 beta chain [Lotus japonicus] g... 321 6e-87
emb|CAD10775.1| ATP synthase, beta subunit [Chlorogalum pomeridi... 306 1e-82
gb|AAK72855.1| ATP synthase beta subunit [Stylobasium spathulatum] 305 3e-82
gb|AAD50894.1| ATP synthase beta subunit [Xanthorrhoea quadrangu... 303 2e-81
gb|AAD50836.1| ATP synthase beta subunit [Chlorophytum comosum] 302 3e-81
>ref|NP_084781.1| ATP synthase CF1 beta chain [Lotus japonicus]
gi|23813722|sp|Q9BBU0|ATPB_LOTJA ATP synthase beta chain
gi|13358962|dbj|BAB33179.1| ATPase beta subunit [Lotus
japonicus]
Length = 498
Score = 321 bits (823), Expect = 6e-87
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +3
Query: 243 MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN 422
MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN
Sbjct: 1 MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN 60
Query: 423 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN 602
VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN
Sbjct: 61 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN 120
Query: 603 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 731
LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR
Sbjct: 121 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 163
>emb|CAD10775.1| ATP synthase, beta subunit [Chlorogalum pomeridianum]
Length = 494
Score = 306 bits (785), Expect = 1e-82
Identities = 154/163 (94%), Positives = 157/163 (95%)
Frame = +3
Query: 243 MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN 422
M INPTTSDP VS LE+KN GRIAQIIGPVLDV FPPGKMPNIYNAL+VKGRDTVGQQIN
Sbjct: 1 MRINPTTSDPAVSTLEEKNLGRIAQIIGPVLDVVFPPGKMPNIYNALVVKGRDTVGQQIN 60
Query: 423 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN 602
VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGG TLGRIFNVLGEP+DN
Sbjct: 61 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGATLGRIFNVLGEPVDN 120
Query: 603 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 731
LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR
Sbjct: 121 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 163
>gb|AAK72855.1| ATP synthase beta subunit [Stylobasium spathulatum]
Length = 498
Score = 305 bits (782), Expect = 3e-82
Identities = 155/163 (95%), Positives = 156/163 (95%)
Frame = +3
Query: 243 MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN 422
M INPTTSDP VSALEKKN GRIAQIIGPVLDV FPPGKMPNIYNAL+VKGRDTVGQQIN
Sbjct: 1 MRINPTTSDPGVSALEKKNPGRIAQIIGPVLDVAFPPGKMPNIYNALVVKGRDTVGQQIN 60
Query: 423 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN 602
VTCEVQQLLGNNRVRAVAMSATDGL RGMEVIDTGA LSVPVGG TLGRIFNVLGEPIDN
Sbjct: 61 VTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPIDN 120
Query: 603 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 731
LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR
Sbjct: 121 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 163
>gb|AAD50894.1| ATP synthase beta subunit [Xanthorrhoea quadrangulata]
Length = 496
Score = 303 bits (775), Expect = 2e-81
Identities = 152/163 (93%), Positives = 155/163 (94%)
Frame = +3
Query: 243 MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN 422
M NPTTSDP VS LE+KN GRIAQIIGPVLDV FPPGKMPNIYNAL+VKGRDTVGQQIN
Sbjct: 1 MRTNPTTSDPAVSTLEEKNLGRIAQIIGPVLDVVFPPGKMPNIYNALVVKGRDTVGQQIN 60
Query: 423 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN 602
VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGA LSVPVGG TLGRIFNVLGEP+DN
Sbjct: 61 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDN 120
Query: 603 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 731
LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR
Sbjct: 121 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 163
>gb|AAD50836.1| ATP synthase beta subunit [Chlorophytum comosum]
Length = 495
Score = 302 bits (774), Expect = 3e-81
Identities = 152/163 (93%), Positives = 156/163 (95%)
Frame = +3
Query: 243 MIINPTTSDPEVSALEKKNTGRIAQIIGPVLDVTFPPGKMPNIYNALIVKGRDTVGQQIN 422
M INPTTS P VS LE+KN GRIAQIIGPVLDV FPPGKMPNI+NAL+VKGRDTVGQQIN
Sbjct: 1 MRINPTTSGPAVSTLEEKNLGRIAQIIGPVLDVVFPPGKMPNIFNALVVKGRDTVGQQIN 60
Query: 423 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGVTLGRIFNVLGEPIDN 602
VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGG TLGRIFNVLGEP+DN
Sbjct: 61 VTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAALSVPVGGATLGRIFNVLGEPVDN 120
Query: 603 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 731
LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR
Sbjct: 121 LGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYR 163
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 617,800,969
Number of Sequences: 1393205
Number of extensions: 13828643
Number of successful extensions: 39526
Number of sequences better than 10.0: 2635
Number of HSP's better than 10.0 without gapping: 37384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39009
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
