Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013980A_C01 KMC013980A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29685|ATP2_HEVBR ATP synthase beta chain, mitochondrial prec... 233 9e-61
pir||T06538 probable H+-transporting two-sector ATPase (EC 3.6.3... 229 1e-59
sp|P17614|ATP2_NICPL ATP synthase beta chain, mitochondrial prec... 204 5e-52
sp|P19023|ATP2_MAIZE ATP synthase beta chain, mitochondrial prec... 204 5e-52
dbj|BAB92708.1| putative ATP synthase beta chain, mitochondrial ... 201 3e-51
>sp|P29685|ATP2_HEVBR ATP synthase beta chain, mitochondrial precursor
gi|82027|pir||S20504 H+-transporting two-sector ATPase
(EC 3.6.3.14) beta chain, mitochondrial - Para rubber
tree gi|18831|emb|CAA41401.1| mitochondrial ATP synthase
beta-subunit [Hevea brasiliensis]
Length = 562
Score = 233 bits (594), Expect = 9e-61
Identities = 129/167 (77%), Positives = 140/167 (83%), Gaps = 4/167 (2%)
Frame = +1
Query: 16 MASRRLASSLIRSSLRRSQSKPSISASASRISQSRPAS---AAPYGYLLNRVAEYATSAA 186
MASRRL SSL+RSS RRS SK IS ++S S P+S A+PYGYLL R AEYATSAA
Sbjct: 1 MASRRLLSSLLRSSSRRSVSKSPISNINPKLSSSSPSSKSRASPYGYLLTRAAEYATSAA 60
Query: 187 APAAAPSSPPAKKEV-PGGGKITDEVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEV 363
A AA P PPAK E GGGKITDE TGKGAIGQVCQVIGAVVDVRF+EGLPPILT+LEV
Sbjct: 61 A-AAPPQPPPAKPEGGKGGGKITDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTSLEV 119
Query: 364 LDHTSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVP 504
LDH+ RLVLEVAQH+GEG+VRTIAMDGTEG+VRG RVLNTGSPITVP
Sbjct: 120 LDHSIRLVLEVAQHMGEGMVRTIAMDGTEGLVRGQRVLNTGSPITVP 166
>pir||T06538 probable H+-transporting two-sector ATPase (EC 3.6.3.14) beta
chain, mitochondrial - garden pea
gi|2116558|dbj|BAA20135.1| F1 ATPase [Pisum sativum]
Length = 561
Score = 229 bits (585), Expect = 1e-59
Identities = 132/166 (79%), Positives = 138/166 (82%), Gaps = 3/166 (1%)
Frame = +1
Query: 16 MASRRLASSLIRSSLRRSQSKPSISASASRI-SQSRPASAAPYGYLLNRVAEYATSAAAP 192
MASRRL SSLIRSSLRRS SKPSISAS SR+ SQSR A+P GYLLNRVA YATSAAA
Sbjct: 1 MASRRLVSSLIRSSLRRSSSKPSISASTSRLTSQSR---ASPCGYLLNRVAHYATSAAAA 57
Query: 193 AAAPSSPPAKKEVPGGGKITDEVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVL-D 369
A PS PPAKKE PGGGKITDE TGKGAIG VCQVIGAVVDVRFEEGLPPILT+L +L
Sbjct: 58 ALPPSPPPAKKEGPGGGKITDEFTGKGAIGHVCQVIGAVVDVRFEEGLPPILTSLGLLGS 117
Query: 370 HTSRL-VLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVP 504
H +R LEVAQ G G VRTIAMD TEGVVRGWRVLNTGSPI+VP
Sbjct: 118 HETRFWTLEVAQ-FGRGRVRTIAMDATEGVVRGWRVLNTGSPISVP 162
>sp|P17614|ATP2_NICPL ATP synthase beta chain, mitochondrial precursor
gi|82133|pir||A24355 H+-transporting two-sector ATPase
(EC 3.6.3.14) beta-1 chain, mitochondrial -
curled-leaved tobacco gi|19685|emb|CAA26620.1| ATP
synthase beta subunit [Nicotiana plumbaginifolia]
Length = 560
Score = 204 bits (519), Expect = 5e-52
Identities = 115/169 (68%), Positives = 130/169 (76%), Gaps = 6/169 (3%)
Frame = +1
Query: 16 MASRRLASSLIRSSLRRSQSK------PSISASASRISQSRPASAAPYGYLLNRVAEYAT 177
MASRRL +SL+R S +R SI SASR S + A+P G+LLNR +YAT
Sbjct: 1 MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRAS----SRASPKGFLLNRAVQYAT 56
Query: 178 SAAAPAAAPSSPPAKKEVPGGGKITDEVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTAL 357
SAAAPA+ PS+PP P G KITDE TG G+IG+VCQVIGAVVDVRF+EGLPPILTAL
Sbjct: 57 SAAAPASQPSTPPKSGSEPSG-KITDEFTGAGSIGKVCQVIGAVVDVRFDEGLPPILTAL 115
Query: 358 EVLDHTSRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVP 504
EVLD+ RLVLEVAQHLGE +VRTIAMDGTEG+VRG RVLNTGSPITVP
Sbjct: 116 EVLDNQIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVP 164
>sp|P19023|ATP2_MAIZE ATP synthase beta chain, mitochondrial precursor
gi|100882|pir||S11491 H+-transporting two-sector ATPase
(EC 3.6.3.14) beta chain, mitochondrial - maize
gi|22173|emb|CAA38140.1| ATPase F1 subunit protein [Zea
mays] gi|897618|gb|AAA70268.1| mitochondrial F-1-ATPase
subunit 2 [Zea mays]
Length = 553
Score = 204 bits (519), Expect = 5e-52
Identities = 114/163 (69%), Positives = 127/163 (76%)
Frame = +1
Query: 16 MASRRLASSLIRSSLRRSQSKPSISASASRISQSRPASAAPYGYLLNRVAEYATSAAAPA 195
MASRR+ SSL+RS+ R + P+ A R RP+ P GYL NR A YA+SAAA A
Sbjct: 1 MASRRVVSSLLRSASRLRAASPA--APRPRAPPHRPS---PAGYLFNRAAAYASSAAAQA 55
Query: 196 AAPSSPPAKKEVPGGGKITDEVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHT 375
A P++PP GGGKITDE TG GAIGQVCQVIGAVVDVRF+EGLPPILTALEVLD+
Sbjct: 56 A-PATPPPATGKTGGGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDNN 114
Query: 376 SRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVP 504
RLVLEVAQHLGE +VRTIAMDGTEG+VRG RVLNTGSPITVP
Sbjct: 115 IRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVP 157
>dbj|BAB92708.1| putative ATP synthase beta chain, mitochondrial precursor [Oryza
sativa (japonica cultivar-group)]
Length = 555
Score = 201 bits (512), Expect = 3e-51
Identities = 108/163 (66%), Positives = 124/163 (75%)
Frame = +1
Query: 16 MASRRLASSLIRSSLRRSQSKPSISASASRISQSRPASAAPYGYLLNRVAEYATSAAAPA 195
MA+RR +S++RS+ R + PS + + R S P G+LLNR A S+AA
Sbjct: 1 MATRRALTSVLRSASRLRAASPSPCPRRAPLHPHRRPS--PAGFLLNRAAAAYASSAAAQ 58
Query: 196 AAPSSPPAKKEVPGGGKITDEVTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHT 375
AAP+ PPA + GGGKITDE TG GA+GQVCQVIGAVVDVRF+EGLPPILTALEVLDH
Sbjct: 59 AAPAPPPASGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHN 118
Query: 376 SRLVLEVAQHLGEGVVRTIAMDGTEGVVRGWRVLNTGSPITVP 504
RLVLEVAQHLGE +VRTIAMDGTEG+VRG RVLNTGSPITVP
Sbjct: 119 IRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVP 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.314 0.130 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,944,360
Number of Sequences: 1393205
Number of extensions: 14741159
Number of successful extensions: 139996
Number of sequences better than 10.0: 4063
Number of HSP's better than 10.0 without gapping: 75085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122649
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
