Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013953A_C01 KMC013953A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189009.2| phragmoplast-associated kinesin-related protein... 52 2e-13
dbj|BAB02786.1| kinesin-like protein [Arabidopsis thaliana] 52 2e-13
ref|NP_567423.1| phragmoplast-associated kinesin-related protein... 51 1e-11
pir||H71402 probable kinesin - Arabidopsis thaliana gi|2244771|e... 51 2e-09
gb|AAF78897.1|AF210816_1 phragmoplast-associated kinesin-related... 41 2e-05
>ref|NP_189009.2| phragmoplast-associated kinesin-related protein, putative; protein
id: At3g23670.1 [Arabidopsis thaliana]
gi|21703149|gb|AAM74514.1| AT3g23670/MDB19_16
[Arabidopsis thaliana] gi|23268687|gb|AAN16470.1|
phragmoplast-associated kinesin-related protein 1-like
protein [Arabidopsis thaliana] gi|23268689|gb|AAN16471.1|
phragmoplast-associated kinesin-related protein 1-like
protein [Arabidopsis thaliana]
Length = 1313
Score = 51.6 bits (122), Expect(2) = 2e-13
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = -1
Query: 480 RAMDAELEAAKAYAHVDKLKKKHEKESTSLNER-LVEARAPKESVPPTYDDDVVMPTFDD 304
RAMDAE EA++AY VDKLK+K+E E +++N++ E + P ES+ + +DD M +D+
Sbjct: 1214 RAMDAEYEASEAYKKVDKLKRKYETEISTVNQQHNAEPQNPIESLQASCNDD-AMAKYDE 1272
Query: 303 DSKDATQY*WR 271
S WR
Sbjct: 1273 PSASDGDNQWR 1283
Score = 44.3 bits (103), Expect(2) = 2e-13
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -2
Query: 272 EDGELAKLAEPSWFCGYDRCNI 207
+D EL+KLAEPSWF GYDRCNI
Sbjct: 1292 KDEELSKLAEPSWFSGYDRCNI 1313
>dbj|BAB02786.1| kinesin-like protein [Arabidopsis thaliana]
Length = 1268
Score = 51.6 bits (122), Expect(2) = 2e-13
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = -1
Query: 480 RAMDAELEAAKAYAHVDKLKKKHEKESTSLNER-LVEARAPKESVPPTYDDDVVMPTFDD 304
RAMDAE EA++AY VDKLK+K+E E +++N++ E + P ES+ + +DD M +D+
Sbjct: 1169 RAMDAEYEASEAYKKVDKLKRKYETEISTVNQQHNAEPQNPIESLQASCNDD-AMAKYDE 1227
Query: 303 DSKDATQY*WR 271
S WR
Sbjct: 1228 PSASDGDNQWR 1238
Score = 44.3 bits (103), Expect(2) = 2e-13
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -2
Query: 272 EDGELAKLAEPSWFCGYDRCNI 207
+D EL+KLAEPSWF GYDRCNI
Sbjct: 1247 KDEELSKLAEPSWFSGYDRCNI 1268
>ref|NP_567423.1| phragmoplast-associated kinesin-related protein (PAKRP1); protein id:
At4g14150.1, supported by cDNA: gi_8745332 [Arabidopsis
thaliana] gi|8745333|gb|AAF78893.1|
phragmoplast-associated kinesin-related protein 1
[Arabidopsis thaliana] gi|8745335|gb|AAF78894.1|
phragmoplast-associated kinesin-related protein 1
[Arabidopsis thaliana]
Length = 1292
Score = 50.8 bits (120), Expect(2) = 1e-11
Identities = 28/62 (45%), Positives = 38/62 (61%)
Frame = -1
Query: 480 RAMDAELEAAKAYAHVDKLKKKHEKESTSLNERLVEARAPKESVPPTYDDDVVMPTFDDD 301
RAMDAE EAA+AY +DKLKKKHE E +LN+ + ++ E T D V P+ +
Sbjct: 1199 RAMDAEYEAAEAYRQIDKLKKKHENEINTLNQLVPQSHIHNEC--STKCDQAVEPSVNAS 1256
Query: 300 SK 295
S+
Sbjct: 1257 SE 1258
Score = 39.3 bits (90), Expect(2) = 1e-11
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2
Query: 272 EDGELAKLAEPSWFCGYDRCNI 207
++ E + LAEPSWF GYDRCNI
Sbjct: 1271 KETEFSNLAEPSWFSGYDRCNI 1292
>pir||H71402 probable kinesin - Arabidopsis thaliana gi|2244771|emb|CAB10194.1|
kinesin like protein [Arabidopsis thaliana]
gi|7268120|emb|CAB78457.1| kinesin like protein
[Arabidopsis thaliana]
Length = 1662
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 28/62 (45%), Positives = 38/62 (61%)
Frame = -1
Query: 480 RAMDAELEAAKAYAHVDKLKKKHEKESTSLNERLVEARAPKESVPPTYDDDVVMPTFDDD 301
RAMDAE EAA+AY +DKLKKKHE E +LN+ + ++ E T D V P+ +
Sbjct: 1190 RAMDAEYEAAEAYRQIDKLKKKHENEINTLNQLVPQSHIHNEC--STKCDQAVEPSVNAS 1247
Query: 300 SK 295
S+
Sbjct: 1248 SE 1249
Score = 32.0 bits (71), Expect(2) = 2e-09
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 272 EDGELAKLAEPSWFCGYDR 216
++ E + LAEPSWF GYDR
Sbjct: 1262 KETEFSNLAEPSWFSGYDR 1280
>gb|AAF78897.1|AF210816_1 phragmoplast-associated kinesin-related protein 1 [Oryza sativa
subsp. japonica]
Length = 817
Score = 40.8 bits (94), Expect(2) = 2e-05
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = -1
Query: 480 RAMDAELEAAKAYAHVDKLKKKHEKESTSLNERLVEARAPKESVPPTYDDDVVMPTFDDD 301
RA+ AE E KAY +D LKK +++E +LN+RL E+ +E+ D+ +D
Sbjct: 719 RALLAEQETEKAYQEIDNLKKNYDQEIVALNQRLSESSHHQETTLAIEACDMETTKYDTA 778
Query: 300 SKDATQY*WR 271
Q WR
Sbjct: 779 GSPGDQQ-WR 787
Score = 27.7 bits (60), Expect(2) = 2e-05
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -2
Query: 239 SWFCGYDRCNI 207
SWF GYD+CNI
Sbjct: 807 SWFSGYDKCNI 817
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 371,093,721
Number of Sequences: 1393205
Number of extensions: 7078297
Number of successful extensions: 19769
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19704
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
