Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013901A_C01 KMC013901A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32857.1| Unknown protein [Arabidopsis thaliana] 145 4e-34
ref|NP_197169.2| putative protein; similar to unknown protein (g... 145 4e-34
dbj|BAB10193.1| protein; similar to unknown protein [Arabidopsis... 145 4e-34
ref|NP_186940.1| unknown protein; protein id: At3g02900.1 [Arabi... 144 5e-34
ref|NP_564482.1| expressed protein; protein id: At1g42960.1, sup... 77 2e-13
>gb|AAL32857.1| Unknown protein [Arabidopsis thaliana]
Length = 168
Score = 145 bits (365), Expect = 4e-34
Identities = 74/106 (69%), Positives = 85/106 (79%), Gaps = 4/106 (3%)
Frame = -2
Query: 509 SKGGGGGDFVSGFLLGGAVFGTLAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERT 333
S+ G GDF++GFLLGGAVFG +AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+T
Sbjct: 63 SRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKT 122
Query: 332 RETLNAKISPLNSAIDKVSSRLRG---NHNAPAAQIENDPEVEATT 204
RETLN KI LNSAID VSSRLRG N ++ +E DPEVEATT
Sbjct: 123 RETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEATT 168
>ref|NP_197169.2| putative protein; similar to unknown protein (gb|AAF26969.1);
protein id: At5g16660.1, supported by cDNA: gi_17065405
[Arabidopsis thaliana] gi|24899755|gb|AAN65092.1|
Unknown protein [Arabidopsis thaliana]
Length = 168
Score = 145 bits (365), Expect = 4e-34
Identities = 74/106 (69%), Positives = 85/106 (79%), Gaps = 4/106 (3%)
Frame = -2
Query: 509 SKGGGGGDFVSGFLLGGAVFGTLAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERT 333
S+ G GDF++GFLLGGAVFG +AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+T
Sbjct: 63 SRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKT 122
Query: 332 RETLNAKISPLNSAIDKVSSRLRG---NHNAPAAQIENDPEVEATT 204
RETLN KI LNSAID VSSRLRG N ++ +E DPEVEATT
Sbjct: 123 RETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEATT 168
>dbj|BAB10193.1| protein; similar to unknown protein [Arabidopsis thaliana]
Length = 177
Score = 145 bits (365), Expect = 4e-34
Identities = 74/106 (69%), Positives = 85/106 (79%), Gaps = 4/106 (3%)
Frame = -2
Query: 509 SKGGGGGDFVSGFLLGGAVFGTLAYVFAPQIRRSLLNE-DEYGFRKAKRPIYYDEGLERT 333
S+ G GDF++GFLLGGAVFG +AY+FAPQIRRS+LNE DEYGF K K+P YYDEGLE+T
Sbjct: 72 SRSGSSGDFIAGFLLGGAVFGAVAYIFAPQIRRSVLNEEDEYGFEKPKQPTYYDEGLEKT 131
Query: 332 RETLNAKISPLNSAIDKVSSRLRG---NHNAPAAQIENDPEVEATT 204
RETLN KI LNSAID VSSRLRG N ++ +E DPEVEATT
Sbjct: 132 RETLNEKIGQLNSAIDNVSSRLRGREKNTSSLNVPVETDPEVEATT 177
>ref|NP_186940.1| unknown protein; protein id: At3g02900.1 [Arabidopsis thaliana]
gi|6728971|gb|AAF26969.1|AC018363_14 unknown protein
[Arabidopsis thaliana] gi|27311637|gb|AAO00784.1|
unknown protein [Arabidopsis thaliana]
Length = 162
Score = 144 bits (364), Expect = 5e-34
Identities = 72/110 (65%), Positives = 86/110 (77%), Gaps = 7/110 (6%)
Frame = -2
Query: 515 GDSKGGGGGDFVSGFLLGGAVFGTLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDEGLER 336
G SKGGG DFV+GFLLG AVFGTLAY+FAPQIRRS+L+E+EYGF+K ++P+YYDEGLE
Sbjct: 52 GGSKGGGSSDFVTGFLLGSAVFGTLAYIFAPQIRRSVLSENEYGFKKPEQPMYYDEGLEE 111
Query: 335 TRETLNAKISPLNSAIDKVSSRLRG-------NHNAPAAQIENDPEVEAT 207
RE LN KI LNSAIDKVSSRL+G N ++P+ +E D E EAT
Sbjct: 112 RREILNEKIGQLNSAIDKVSSRLKGGRSGSSKNTSSPSVPVETDAEAEAT 161
>ref|NP_564482.1| expressed protein; protein id: At1g42960.1, supported by cDNA:
gi_13878130, supported by cDNA: gi_17104806 [Arabidopsis
thaliana] gi|25373224|pir||B96497 unknown protein
[imported] - Arabidopsis thaliana
gi|12323056|gb|AAG51516.1|AC068324_4 unknown protein
[Arabidopsis thaliana]
gi|13878131|gb|AAK44143.1|AF370328_1 unknown protein
[Arabidopsis thaliana] gi|17104807|gb|AAL34292.1|
unknown protein [Arabidopsis thaliana]
Length = 168
Score = 76.6 bits (187), Expect = 2e-13
Identities = 46/107 (42%), Positives = 60/107 (55%), Gaps = 3/107 (2%)
Frame = -2
Query: 518 YGDSKGGGG-GDFVSGFLLGGAVFGTLAYVFAPQIRRSLLNEDEYGFRKAKRPIYYDE-- 348
Y D G G G FV GF+LGG + G L V+APQI +++ D + YDE
Sbjct: 62 YRDDDGSGSTGLFVGGFILGGLIVGALGCVYAPQISKAIAGADRKDLMRKLPKFIYDEEK 121
Query: 347 GLERTRETLNAKISPLNSAIDKVSSRLRGNHNAPAAQIENDPEVEAT 207
LE+TR+ L KI+ LNSAID VSS+L+ A + D E+EAT
Sbjct: 122 ALEKTRKVLAEKIAQLNSAIDDVSSQLKSEDTPNGAALSTD-EIEAT 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,694,757
Number of Sequences: 1393205
Number of extensions: 11024900
Number of successful extensions: 61062
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 41748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57814
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
