Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013872A_C01 KMC013872A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189033.1| HAPp48,5 protein; protein id: At3g23910.1, supp... 49 3e-05
ref|NP_189068.1| hypothetical protein; protein id: At3g24255.1 [... 48 9e-05
ref|NP_494048.1| F-box domain containing protein family member [... 32 4.0
emb|CAA59148.1| orf2 [Bifidobacterium longum] 31 9.0
>ref|NP_189033.1| HAPp48,5 protein; protein id: At3g23910.1, supported by cDNA:
gi_20259509 [Arabidopsis thaliana]
gi|1742965|emb|CAA70756.1| HAPp48,5 protein [Arabidopsis
thaliana] gi|9294659|dbj|BAB03008.1| HAPp48,5 protein
[Arabidopsis thaliana] gi|20259510|gb|AAM13875.1|
putative HAPp48,5 protein [Arabidopsis thaliana]
gi|21436469|gb|AAM51435.1| putative HAPp48,5 protein
[Arabidopsis thaliana]
Length = 421
Score = 49.3 bits (116), Expect = 3e-05
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = -2
Query: 361 IKNLANSLDIHIRQNISSFVDAVEKVLIEQSQLDPQAGDSS 239
++ LANSLD+ RQN+S F+DA+EK+L+EQ++ + Q+ SS
Sbjct: 379 VEELANSLDLETRQNLSGFMDAIEKILVEQTREELQSNKSS 419
Score = 45.4 bits (106), Expect = 5e-04
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 12/79 (15%)
Frame = -3
Query: 555 ELLIEVEGNM-KLKNVQVFPNDIHVNDIVDAAKSV-----------SKFSLQWFIQKVQD 412
ELLI ++ ++ ++FPNDI++ DI++AA S ++ S+QW + KVQD
Sbjct: 241 ELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQD 300
Query: 411 RIILNKLRHLAVKDANKSR 355
+II LR V + R
Sbjct: 301 KIISTTLRKYIVMSSKTIR 319
>ref|NP_189068.1| hypothetical protein; protein id: At3g24255.1 [Arabidopsis
thaliana]
Length = 836
Score = 47.8 bits (112), Expect = 9e-05
Identities = 20/41 (48%), Positives = 34/41 (82%)
Frame = -2
Query: 361 IKNLANSLDIHIRQNISSFVDAVEKVLIEQSQLDPQAGDSS 239
++ LANSLD+ RQN+S F+DAVEK+L++Q++ + ++ +SS
Sbjct: 794 LEELANSLDLETRQNLSGFMDAVEKILVQQTREELKSNESS 834
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 12/68 (17%)
Frame = -3
Query: 555 ELLIEVEGNM-KLKNVQVFPNDIHVNDIVDAAKSV-----------SKFSLQWFIQKVQD 412
ELLI ++ ++ ++FPNDI++ DI++AA S ++ S+QW + KVQD
Sbjct: 656 ELLIYLKDKTTEITKFEMFPNDIYIGDIIEAADSFRQVRLHSAVLDTRSSVQWVVAKVQD 715
Query: 411 RIILNKLR 388
+II LR
Sbjct: 716 KIISTTLR 723
>ref|NP_494048.1| F-box domain containing protein family member [Caenorhabditis
elegans] gi|7504616|pir||T33541 hypothetical protein
F58E1.14 - Caenorhabditis elegans
gi|3786505|gb|AAC67475.1| Hypothetical protein F58E1.14
[Caenorhabditis elegans]
Length = 327
Score = 32.3 bits (72), Expect = 4.0
Identities = 20/55 (36%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -3
Query: 531 NMKLKNVQV-FPNDIH-VNDIVDAAKSVSKFSLQWFIQKVQDRIILNKLRHLAVK 373
N+K+ N+ + F N I V ++ A + + KFSL+ + K D +L +LRHL K
Sbjct: 143 NLKILNLSIGFTNKISLVVELYSAFQHIKKFSLRQYSHKPLDSTLLLELRHLLSK 197
>emb|CAA59148.1| orf2 [Bifidobacterium longum]
Length = 306
Score = 31.2 bits (69), Expect = 9.0
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = -3
Query: 516 NVQVFPNDIHVNDIVDAAKSVSKFSLQWFIQKV---QDRIILNKLRHLAVKDA 367
NV +FP+ +H ++ D AKS+ K W + + +D I N +A++ A
Sbjct: 238 NVSLFPDPLHAREVEDIAKSIHK----WIVTRSRMWRDGAIANAATFIAIQSA 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,861,060
Number of Sequences: 1393205
Number of extensions: 7637816
Number of successful extensions: 16264
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16261
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
