Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013870A_C01 KMC013870A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198028.2| putative protein; protein id: At5g26760.1, supp... 80 2e-14
pir||T01757 hypothetical protein A_IG002P16.20 - Arabidopsis tha... 73 2e-12
ref|NP_173402.1| DYW7 protein; protein id: At1g19720.1 [Arabidop... 33 2.5
pir||T52647 hypothetical protein DYW7 [imported] - Arabidopsis t... 33 2.5
pir||C86330 F6F9.22 protein - Arabidopsis thaliana gi|10086495|g... 33 2.5
>ref|NP_198028.2| putative protein; protein id: At5g26760.1, supported by cDNA:
gi_20259373 [Arabidopsis thaliana]
Length = 430
Score = 79.7 bits (195), Expect = 2e-14
Identities = 37/76 (48%), Positives = 54/76 (70%)
Frame = -2
Query: 510 ALPAFRMKPWPVVVLLFIDALSVCRIPALISYLMDRRDLFHQVLNGSPLGMEEYEVLKDL 331
A+P+FR+K W V+VLLF+DALSV RIP + Y+ +R ++L GS +G EEYE +KD+
Sbjct: 359 AVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISNR----DKILEGSGIGNEEYETMKDI 414
Query: 330 IIPLGQAPSFLFSKGS 283
++PLG+ P F G+
Sbjct: 415 LLPLGRVPQFATRSGA 430
>pir||T01757 hypothetical protein A_IG002P16.20 - Arabidopsis thaliana
gi|2191168|gb|AAB61054.1| contains similarity to myosin
heavy chain [Arabidopsis thaliana]
Length = 1133
Score = 73.2 bits (178), Expect = 2e-12
Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 24/100 (24%)
Frame = -2
Query: 510 ALPAFRMKPWPVVVLLFIDALSVCRIPALISYLMDRRDLF-------------------- 391
A+P+FR+K W V+VLLF+DALSV RIP + Y+ +R +
Sbjct: 1034 AVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISNRDKVCSSQLEHNKWRTLTEFNLLIN 1093
Query: 390 ----HQVLNGSPLGMEEYEVLKDLIIPLGQAPSFLFSKGS 283
+Q+L GS +G EEYE +KD+++PLG+ P F G+
Sbjct: 1094 VGEKYQILEGSGIGNEEYETMKDILLPLGRVPQFATRSGA 1133
>ref|NP_173402.1| DYW7 protein; protein id: At1g19720.1 [Arabidopsis thaliana]
Length = 1470
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = +3
Query: 120 ITPTILALKHVLALQGGKGNFSKGKKIWHSIIKET*VFHEVPGLGH 257
ITP L ++ G GN +GKK+++SI + +H +P L H
Sbjct: 621 ITPNRGTLSSIILAHGLMGNVDEGKKVFYSIAND---YHIIPALEH 663
>pir||T52647 hypothetical protein DYW7 [imported] - Arabidopsis thaliana
(fragment) gi|7799758|emb|CAA06829.1| DYW7 protein
[Arabidopsis thaliana]
Length = 406
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = +3
Query: 120 ITPTILALKHVLALQGGKGNFSKGKKIWHSIIKET*VFHEVPGLGH 257
ITP L ++ G GN +GKK+++SI + +H +P L H
Sbjct: 133 ITPNRGTLSSIILAHGLMGNVDEGKKVFYSIAND---YHIIPALEH 175
>pir||C86330 F6F9.22 protein - Arabidopsis thaliana
gi|10086495|gb|AAG12555.1|AC007797_15 Unknown Protein
[Arabidopsis thaliana]
Length = 894
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/46 (34%), Positives = 25/46 (53%)
Frame = +3
Query: 120 ITPTILALKHVLALQGGKGNFSKGKKIWHSIIKET*VFHEVPGLGH 257
ITP L ++ G GN +GKK+++SI + +H +P L H
Sbjct: 621 ITPNRGTLSSIILAHGLMGNVDEGKKVFYSIAND---YHIIPALEH 663
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,078,364
Number of Sequences: 1393205
Number of extensions: 10255979
Number of successful extensions: 23345
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23333
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
