Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013842A_C01 KMC013842A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186811.1| hypothetical protein; protein id: At3g01620.1 [... 87 1e-16
ref|NP_176955.1| unknown protein; protein id: At1g67880.1, suppo... 87 2e-16
ref|NP_172759.1| putative beta-1,4-N-acetylglucosaminyltransfera... 87 2e-16
ref|NP_196952.1| putative protein; protein id: At5g14480.1 [Arab... 86 5e-16
ref|NP_189391.1| hypothetical protein; protein id: At3g27540.1, ... 81 1e-14
>ref|NP_186811.1| hypothetical protein; protein id: At3g01620.1 [Arabidopsis
thaliana] gi|6016720|gb|AAF01546.1|AC009325_16
hypothetical protein [Arabidopsis thaliana]
gi|27754687|gb|AAO22787.1| unknown protein [Arabidopsis
thaliana] gi|28394015|gb|AAO42415.1| unknown protein
[Arabidopsis thaliana]
Length = 388
Score = 87.4 bits (215), Expect = 1e-16
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = -1
Query: 628 EEYTFREIIGKLGPIPHSYSAVHLPAYLLNYADRYKFLLPGNCRRESG 485
EE+TFREIIGKLGPIP SYSAVHLP YL+ AD YK+LLPGNC+RESG
Sbjct: 341 EEHTFREIIGKLGPIPRSYSAVHLPGYLIQNADSYKYLLPGNCKRESG 388
>ref|NP_176955.1| unknown protein; protein id: At1g67880.1, supported by cDNA:
gi_19310604 [Arabidopsis thaliana]
gi|25404681|pir||E96701 unknown protein, 88937-90309
[imported] - Arabidopsis thaliana
gi|12324065|gb|AAG51993.1|AC012563_3 unknown protein;
88937-90309 [Arabidopsis thaliana]
gi|19310605|gb|AAL85033.1| unknown protein [Arabidopsis
thaliana]
Length = 390
Score = 87.0 bits (214), Expect = 2e-16
Identities = 38/46 (82%), Positives = 43/46 (92%)
Frame = -1
Query: 628 EEYTFREIIGKLGPIPHSYSAVHLPAYLLNYADRYKFLLPGNCRRE 491
EEYTF++IIGK+GPIPHSYSAVHLPAYLL A+RYKFLLPGNC R+
Sbjct: 343 EEYTFKDIIGKMGPIPHSYSAVHLPAYLLENAERYKFLLPGNCLRD 388
>ref|NP_172759.1| putative beta-1,4-N-acetylglucosaminyltransferase; protein id:
At1g12990.1 [Arabidopsis thaliana]
gi|25518744|pir||H86263 hypothetical protein F3F19.2
[imported] - Arabidopsis thaliana
gi|4850383|gb|AAD31053.1|AC007357_2 Contains similarity
to gi|4417304 F15O11.7 putative
beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase from
Arabidopsis thaliana BAC gb|AC006446
Length = 388
Score = 87.0 bits (214), Expect = 2e-16
Identities = 38/47 (80%), Positives = 44/47 (92%)
Frame = -1
Query: 628 EEYTFREIIGKLGPIPHSYSAVHLPAYLLNYADRYKFLLPGNCRRES 488
EEYTF+EIIGK+GPIPHS+SAVHLP+YLL AD+Y+FLLPGNC RES
Sbjct: 341 EEYTFKEIIGKMGPIPHSFSAVHLPSYLLENADKYRFLLPGNCIRES 387
>ref|NP_196952.1| putative protein; protein id: At5g14480.1 [Arabidopsis thaliana]
gi|11357551|pir||T48621 hypothetical protein F18O22.270
- Arabidopsis thaliana gi|7573473|emb|CAB87787.1|
putative protein [Arabidopsis thaliana]
Length = 387
Score = 85.5 bits (210), Expect = 5e-16
Identities = 39/48 (81%), Positives = 43/48 (89%)
Frame = -1
Query: 628 EEYTFREIIGKLGPIPHSYSAVHLPAYLLNYADRYKFLLPGNCRRESG 485
EEYTFREIIGKLGPIP SYSAVHLPA+L+ A+ YK+LLPGNC RESG
Sbjct: 340 EEYTFREIIGKLGPIPRSYSAVHLPAHLIEKAESYKYLLPGNCIRESG 387
>ref|NP_189391.1| hypothetical protein; protein id: At3g27540.1, supported by cDNA:
gi_20466725 [Arabidopsis thaliana]
gi|11994181|dbj|BAB01284.1|
gb|AAF01546.1~gene_id:MMJ24.9~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|20466726|gb|AAM20680.1| unknown protein [Arabidopsis
thaliana] gi|23198206|gb|AAN15630.1| unknown protein
[Arabidopsis thaliana]
Length = 390
Score = 80.9 bits (198), Expect = 1e-14
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = -1
Query: 628 EEYTFREIIGKLGPIPHSYSAVHLPAYLLNYADRYKFLLPGNCRRE 491
EEYTF+EIIGK+GP+P SYSAVHLP+YLL A++YK+LLPGNC RE
Sbjct: 339 EEYTFKEIIGKMGPVPRSYSAVHLPSYLLYNAEQYKYLLPGNCIRE 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,904,723
Number of Sequences: 1393205
Number of extensions: 10847509
Number of successful extensions: 22864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22858
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
