Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013807A_C01 KMC013807A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42511.1| unknown protein [Arabidopsis thaliana] gi|290290... 80 1e-14
ref|NP_196860.1| putative protein; protein id: At5g13560.1 [Arab... 80 1e-14
dbj|BAB64644.1| P0011G08.15 [Oryza sativa (japonica cultivar-gro... 55 6e-07
dbj|BAB28906.1| unnamed protein product [Mus musculus] 41 0.010
ref|NP_181273.1| hypothetical protein; protein id: At2g37370.1 [... 36 0.24
>dbj|BAC42511.1| unknown protein [Arabidopsis thaliana] gi|29029006|gb|AAO64882.1|
At5g13560 [Arabidopsis thaliana]
Length = 679
Score = 80.5 bits (197), Expect = 1e-14
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = -2
Query: 520 PSAPAPGTPSPSASARDTDFLKPETDGPPKSSSVSAGPV--LDPEAELAKLESEFGKVRH 347
P +P P + S +AS T KPE P++ + +AG +PEAELA+LESEFGKV
Sbjct: 600 PKSPKPSSSSMNASTESTQTQKPELSNSPQAPNPAAGSSQEFNPEAELAELESEFGKVAR 659
Query: 346 DYSTEEIGDWEFDELEREL 290
DYS +E+ WEFDELE+EL
Sbjct: 660 DYSADEVDGWEFDELEKEL 678
>ref|NP_196860.1| putative protein; protein id: At5g13560.1 [Arabidopsis thaliana]
gi|9758021|dbj|BAB08682.1|
gb|AAC98056.1~gene_id:MSH12.2~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 677
Score = 80.5 bits (197), Expect = 1e-14
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = -2
Query: 520 PSAPAPGTPSPSASARDTDFLKPETDGPPKSSSVSAGPV--LDPEAELAKLESEFGKVRH 347
P +P P + S +AS T KPE P++ + +AG +PEAELA+LESEFGKV
Sbjct: 598 PKSPKPSSSSMNASTESTQTQKPELSNSPQAPNPAAGSSQEFNPEAELAELESEFGKVAR 657
Query: 346 DYSTEEIGDWEFDELEREL 290
DYS +E+ WEFDELE+EL
Sbjct: 658 DYSADEVDGWEFDELEKEL 676
>dbj|BAB64644.1| P0011G08.15 [Oryza sativa (japonica cultivar-group)]
Length = 539
Score = 54.7 bits (130), Expect = 6e-07
Identities = 33/56 (58%), Positives = 38/56 (66%)
Frame = -2
Query: 457 KPETDGPPKSSSVSAGPVLDPEAELAKLESEFGKVRHDYSTEEIGDWEFDELEREL 290
K ET PKS + P LD ++ELAKLE EFG+V + YS EEI WEFDELE EL
Sbjct: 478 KAETVVSPKSPAKPDQP-LDLDSELAKLELEFGQV-NKYSPEEISGWEFDELEEEL 531
>dbj|BAB28906.1| unnamed protein product [Mus musculus]
Length = 193
Score = 40.8 bits (94), Expect = 0.010
Identities = 29/79 (36%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Frame = +3
Query: 288 SNSLSSSSNSQSPISSVE*S*RTFPNSDSSLANSASGSNTGPAETEDDLGGPSVSGFKKS 467
S+S SSSSNS S SS S + ++ SS ++S+S S++ + + G ++G
Sbjct: 95 SSSSSSSSNSSSSSSSSSASSASSASNCSSRSSSSSSSSSSNSSSSSSSVGGEITGGAGG 154
Query: 468 VSRAE-AEGEGVPGAGAEG 521
RA AEG G PG EG
Sbjct: 155 AERARRAEGTGGPGTPGEG 173
>ref|NP_181273.1| hypothetical protein; protein id: At2g37370.1 [Arabidopsis
thaliana] gi|25408546|pir||H84791 hypothetical protein
At2g37370 [imported] - Arabidopsis thaliana
gi|4056490|gb|AAC98056.1| hypothetical protein
[Arabidopsis thaliana]
Length = 697
Score = 36.2 bits (82), Expect = 0.24
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = -2
Query: 520 PSAPAPGTPSPSASAR------DTDFLKPETDGPPKSSSVSAGPVLDPEAELAKLESEFG 359
PS + + SPS DT D P S S+G DP + +LE E
Sbjct: 611 PSRTSSSSRSPSLKMTHETPLSDTVLKLSGGDDSPDSKKGSSGKEEDPAKK--QLELELD 668
Query: 358 KVRHDYSTEEIGDWEFDELERELDSGHSA 272
++ +EI DWEFD L+ L S S+
Sbjct: 669 VDGEEFLADEINDWEFDALDETLTSKTSS 697
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,054,649
Number of Sequences: 1393205
Number of extensions: 10321631
Number of successful extensions: 44363
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 39145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43892
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
