Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013803A_C01 KMC013803A_c01
(1004 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52145.1| hypothetical protein [Dictyostelium discoideum] 42 0.011
ref|NP_240158.1| basal-body rod modification protein FlgD [Buchn... 33 5.3
>gb|AAO52145.1| hypothetical protein [Dictyostelium discoideum]
Length = 984
Score = 42.4 bits (98), Expect = 0.011
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = -1
Query: 1004 LNDEDVHAIFRQVVIIFHSQISEAFSRFDISTSQAQNRLSRDIKHILQCIRSLP-SGDLG 828
L + + +F + +F+S E S+FD+S ++ R+ D+ H+L IR+LP +GD G
Sbjct: 912 LPPDQLFKVFTNIYFMFNSLFIENLSKFDMSHKLSKRRIHNDVLHLLNSIRNLPNAGDPG 971
Query: 827 KSDTPNWGQLDEFLVQRF 774
++++L Q F
Sbjct: 972 -------NDIEDYLNQHF 982
>ref|NP_240158.1| basal-body rod modification protein FlgD [Buchnera sp. APS]
gi|11386806|sp|P57421|FLGD_BUCAI Basal-body rod
modification protein flgD gi|25355178|pir||D84969
basal-body rod modification protein flgD [imported] -
Buchnera sp. (strain APS) gi|10039010|dbj|BAB13044.1|
basal-body rod modification protein flgD [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
Length = 236
Score = 33.5 bits (75), Expect = 5.3
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 380 FSNHVYIDQSIAMAEVMGRRISNPKKSFIH*FHIYSQLNITIMETAT 520
FSN + +Q+I ++ ++GR + P K IH +Q I + E AT
Sbjct: 91 FSNQISKNQNIQLSTLIGRHVMVPNKKIIHTKDTKTQFGIELFEKAT 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 849,606,540
Number of Sequences: 1393205
Number of extensions: 18544615
Number of successful extensions: 35664
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35659
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 57945683670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
