Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013778A_C01 KMC013778A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_145599.1| similar to MrgA4 RF-amide G protein-coupled rec... 35 0.50
sp|P14548|CYB_LEITA Cytochrome b gi|2144288|pir||H22848 ubiquino... 35 0.50
gb|AAA62273.1| ORF2 33 2.5
ref|NP_172969.1| hypothetical protein; protein id: At1g15170.1 [... 33 3.2
pir||F86285 F9L1.11 protein - Arabidopsis thaliana gi|5103814|gb... 33 3.2
>ref|XP_145599.1| similar to MrgA4 RF-amide G protein-coupled receptor [Mus musculus]
Length = 392
Score = 35.4 bits (80), Expect = 0.50
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -1
Query: 125 YYFIFCHHID*TYLLLQI*PICWFIIYFACIGTIATTMLIS 3
+ F+ CH I+ T LLL++ P+ W I F C TI T + I+
Sbjct: 146 FLFLLCHIINSTMLLLKVLPLNW--ILFHCFNTIRTVLYIT 184
>sp|P14548|CYB_LEITA Cytochrome b gi|2144288|pir||H22848 ubiquinol-cytochrome-c
reductase (EC 1.10.2.2) cytochrome b [validated] -
Leishmania tarentolae mitochondrion
Length = 371
Score = 35.4 bits (80), Expect = 0.50
Identities = 36/134 (26%), Positives = 57/134 (41%), Gaps = 8/134 (5%)
Frame = -1
Query: 410 FVI*INIFYKLAILYYFLDCD--CDKVGNSYLFALFPRKIIPMIIIIFSSGFI*CNVEFW 237
FV+ + IF L L+YF+ D CD+ FA + ++ + F+ + F+
Sbjct: 188 FVLILVIFMHLFCLHYFMSSDGFCDR------FAFYCERLCFCMWFYLRDMFLAFLILFY 241
Query: 236 IIVVIYYNCKFFNCQFHPV*WLYA-TFILEDKIL--WLLLYYFIFCHHID*TY---LLLQ 75
++ I+ N F FH W+ T DKIL W L+ F F + + LL+
Sbjct: 242 VVYFIFINWYFV---FHEESWVIVDTLKTSDKILPEWFFLFLFGFLKAVPDKFTGLLLMV 298
Query: 74 I*PICWFIIYFACI 33
I F+ CI
Sbjct: 299 ILLFSLFLFILNCI 312
>gb|AAA62273.1| ORF2
Length = 141
Score = 33.1 bits (74), Expect = 2.5
Identities = 23/75 (30%), Positives = 36/75 (47%), Gaps = 6/75 (8%)
Frame = -1
Query: 242 FWIIVVIYYNCKFFNCQFHPV*WLYATFILEDKILWLLLYYFIFCHHID*TYLLLQI*-- 69
FW VVI+Y C F+C + F + IL++ +YF+ C YL+ +
Sbjct: 51 FW--VVIFYWC--FDCIVY--------FFCDVIILFIFFFYFVLCFLYCCFYLVCLVFFC 98
Query: 68 ----PICWFIIYFAC 36
+C+F+IYF C
Sbjct: 99 IFCCVLCYFLIYFLC 113
>ref|NP_172969.1| hypothetical protein; protein id: At1g15170.1 [Arabidopsis
thaliana] gi|22655074|gb|AAM98128.1| unknown protein
[Arabidopsis thaliana]
Length = 481
Score = 32.7 bits (73), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (51%)
Frame = -1
Query: 134 LLLYYFIFCHHID*TYLLLQI*PICWFIIYFACIGTIATTMLIS 3
L+ Y +FC H+ P+CWF++Y + +G + + IS
Sbjct: 188 LITSYVVFCIHV----------PLCWFLVYNSGLGNLGGALAIS 221
>pir||F86285 F9L1.11 protein - Arabidopsis thaliana
gi|5103814|gb|AAD39644.1|AC007591_9 Strong similarity to
gi|4734005 F3L12.7 hypothetical protein from Arabidopsis
thaliana BAC gb|AC007178
Length = 479
Score = 32.7 bits (73), Expect = 3.2
Identities = 13/44 (29%), Positives = 23/44 (51%)
Frame = -1
Query: 134 LLLYYFIFCHHID*TYLLLQI*PICWFIIYFACIGTIATTMLIS 3
L+ Y +FC H+ P+CWF++Y + +G + + IS
Sbjct: 188 LITSYVVFCIHV----------PLCWFLVYNSGLGNLGGALAIS 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,497,759
Number of Sequences: 1393205
Number of extensions: 9332345
Number of successful extensions: 25148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25102
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
