Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013760A_C01 KMC013760A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190922.1| putative protein; protein id: At3g53540.1 [Arab... 71 1e-11
ref|NP_567819.1| putative protein; protein id: At4g28760.1, supp... 52 5e-06
pir||T04523 hypothetical protein F16A16.130 - Arabidopsis thalia... 50 2e-05
gb|AAK82439.1|AC091247_6 hypothetical protein [Oryza sativa] 42 0.007
ref|NP_199201.1| putative protein; protein id: At5g43880.1 [Arab... 40 0.027
>ref|NP_190922.1| putative protein; protein id: At3g53540.1 [Arabidopsis thaliana]
gi|11357793|pir||T45894 hypothetical protein F4P12.240 -
Arabidopsis thaliana gi|6729505|emb|CAB67661.1| putative
protein [Arabidopsis thaliana]
Length = 932
Score = 70.9 bits (172), Expect = 1e-11
Identities = 43/107 (40%), Positives = 60/107 (55%), Gaps = 4/107 (3%)
Frame = +1
Query: 256 SGIPIKKLLEEEMPTKTESKRRSPGVIARWMGLEGLPFQQPANKQHHGFSEKHPGKAAAQ 435
+G+P+K LL +EM + ESK+RSP +IAR MGL+ LP Q ++KQ
Sbjct: 52 TGVPMKSLLAQEMSKQKESKKRSPSIIARLMGLDVLPSQSSSHKQQ------------KS 99
Query: 436 LEKTRSRSDGRSSRRS----SKDPEEFKDVFEVSEISKVESARYSSH 564
+E + RS G +S +S SK ++FKDVFEV + ES R H
Sbjct: 100 MENQQGRSGGGTSYKSLGKRSKGEQKFKDVFEVLDAKMAESNRNLYH 146
>ref|NP_567819.1| putative protein; protein id: At4g28760.1, supported by cDNA:
gi_15293152, supported by cDNA: gi_21281094 [Arabidopsis
thaliana] gi|15293153|gb|AAK93687.1| unknown protein
[Arabidopsis thaliana] gi|21281095|gb|AAM44897.1|
unknown protein [Arabidopsis thaliana]
Length = 924
Score = 52.0 bits (123), Expect = 5e-06
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 196 GVADQDSFSSKFGRRSSTRVSGIPIKKLLEEEMPTKTESKRRSPGVIARWMGLEGLP--F 369
G ++ + S R +S+++SG P+KKL+ EM + E K+ V+A+ MGLE LP
Sbjct: 67 GHSEAELIMSDLRRSASSKLSGTPMKKLIAREMSKEVEHKQSPTNVVAKLMGLETLPQTH 126
Query: 370 QQPANKQHHGFSEKHPGKAAAQLEKTRSRSDGRSSRRSSKDPEEFKDVFE 519
Q+ A ++ S H + L + + +D + EFKDV+E
Sbjct: 127 QETATQRSKSRSNSH-----SSLNHSMTSTDNEVQKYQDFS-REFKDVYE 170
>pir||T04523 hypothetical protein F16A16.130 - Arabidopsis thaliana
gi|4218122|emb|CAA22976.1| putative protein [Arabidopsis
thaliana] gi|7269731|emb|CAB81464.1| putative protein
[Arabidopsis thaliana]
Length = 880
Score = 50.4 bits (119), Expect = 2e-05
Identities = 33/101 (32%), Positives = 52/101 (50%), Gaps = 2/101 (1%)
Frame = +1
Query: 223 SKFGRRSSTRVSGIPIKKLLEEEMPTKTESKRRSPGVIARWMGLEGLP--FQQPANKQHH 396
S R +S+++SG P+KKL+ EM + E K+ V+A+ MGLE LP Q+ A ++
Sbjct: 2 SDLRRSASSKLSGTPMKKLIAREMSKEVEHKQSPTNVVAKLMGLETLPQTHQETATQRSK 61
Query: 397 GFSEKHPGKAAAQLEKTRSRSDGRSSRRSSKDPEEFKDVFE 519
S H + L + + +D + EFKDV+E
Sbjct: 62 SRSNSH-----SSLNHSMTSTDNEVQKYQDFS-REFKDVYE 96
>gb|AAK82439.1|AC091247_6 hypothetical protein [Oryza sativa]
Length = 758
Score = 41.6 bits (96), Expect = 0.007
Identities = 26/85 (30%), Positives = 40/85 (46%)
Frame = +1
Query: 205 DQDSFSSKFGRRSSTRVSGIPIKKLLEEEMPTKTESKRRSPGVIARWMGLEGLPFQQPAN 384
+Q S ++ R + P K L+ ++ + E +R SP VIA+ MGL+ LP A+
Sbjct: 2 EQISLEHRYKECRPRRNNSCPTKTLVGKDQLKELEHRRPSPSVIAKLMGLDVLPPAYVAH 61
Query: 385 KQHHGFSEKHPGKAAAQLEKTRSRS 459
QH F + Q T+ RS
Sbjct: 62 NQHQEFKDVFEVSEEPQEAVTKERS 86
>ref|NP_199201.1| putative protein; protein id: At5g43880.1 [Arabidopsis thaliana]
gi|8953749|dbj|BAA98068.1|
gene_id:F6B6.2~pir||T04523~similar to unknown protein
[Arabidopsis thaliana] gi|22136044|gb|AAM91604.1|
putative protein [Arabidopsis thaliana]
Length = 836
Score = 39.7 bits (91), Expect = 0.027
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = +1
Query: 253 VSGIPIKKLLEEEMPTKTESKRRSPGVIARWMGLEGLPFQQPANKQH 393
V+G P+K LLE+EM + E K S ++A+ MGL+ P Q A + +
Sbjct: 64 VNGTPMKMLLEQEMSKEMEVKLSSTNLVAKLMGLDSFPQTQSAPRSY 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.313 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,063,948
Number of Sequences: 1393205
Number of extensions: 13201297
Number of successful extensions: 29562
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 28349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29522
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
