Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013717A_C01 KMC013717A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF61487.1|AF197159_1 cubilin [Mus musculus] 34 2.0
ref|NP_445784.1| cubilin; cubilin (intrinsic factor-cobalamin re... 32 7.5
>gb|AAF61487.1|AF197159_1 cubilin [Mus musculus]
Length = 832
Score = 33.9 bits (76), Expect = 2.0
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 247 SIPTSSCFSWSRLSHESPWYSLLHIHYPTTIGTKFGIQSTDKNCRTDFIAIFK 405
+ P +S SW+ ++HES H+ + + F I S+D CR F+ +++
Sbjct: 33 TFPENSRCSWTAVTHESK-------HWEISFDSNFRIPSSDSQCRNSFVKVWE 78
>ref|NP_445784.1| cubilin; cubilin (intrinsic factor-cobalamin receptor) [Rattus
norvegicus] gi|7459675|pir||T08618 intrinsic factor-B12
receptor CUBILIN precursor - rat
gi|3834380|gb|AAC71661.1| intrinsic factor-B12 receptor
precursor [Rattus norvegicus]
Length = 3623
Score = 32.0 bits (71), Expect = 7.5
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +1
Query: 247 SIPTSSCFSWSRLSHESPWYSLLHIHYPTTIGTKFGIQSTDKNCRTDFIAIFK 405
+ P +S SW+ ++HES H+ + + F I S+D C+ F+ +++
Sbjct: 2824 TFPENSRCSWTVITHESK-------HWEISFDSNFRIPSSDSQCQNSFVKVWE 2869
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,453,245
Number of Sequences: 1393205
Number of extensions: 11824372
Number of successful extensions: 28384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28381
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
