Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013697A_C01 KMC013697A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD38941.1|AF143812_1 1-D-deoxyxylulose 5-phosphate synthase ... 198 3e-50
pir||T09543 deoxyxylulose synthase (EC 2.2.1.-) TKT2 precursor, ... 195 3e-49
emb|CAD22530.1| 1-deoxy-D-xylulose 5-phosphate synthase 1 [Medic... 193 1e-48
gb|AAD56390.2|AF182286_1 1-deoxy-D-xylulose-5-phosphate synthase... 192 2e-48
pir||T52289 probable transketolase [imported] - Arabidopsis thal... 183 1e-45
>gb|AAD38941.1|AF143812_1 1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon esculentum]
Length = 719
Score = 198 bits (504), Expect = 3e-50
Identities = 96/106 (90%), Positives = 103/106 (96%)
Frame = -1
Query: 527 VTVADARFCKPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRP 348
VTVADARFCKPLDH+LIRSLAKSHE+LITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRP
Sbjct: 614 VTVADARFCKPLDHALIRSLAKSHEVLITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRP 673
Query: 347 MVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREALEVMS 210
+VLPD YIDHGSP DQL++AGLTPSHIAATV N+LGQTREALEVM+
Sbjct: 674 IVLPDRYIDHGSPVDQLAEAGLTPSHIAATVFNILGQTREALEVMT 719
>pir||T09543 deoxyxylulose synthase (EC 2.2.1.-) TKT2 precursor, chloroplast
[validated] - pepper gi|3559816|emb|CAA75778.1|
transketolase 2 [Capsicum annuum]
Length = 719
Score = 195 bits (495), Expect = 3e-49
Identities = 94/106 (88%), Positives = 103/106 (96%)
Frame = -1
Query: 527 VTVADARFCKPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRP 348
VTVADARFCKPLD +LIRSLAKSHE+L+TVE+GSIGGFGSHVVQFMALDGLLDGKLKWRP
Sbjct: 614 VTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRP 673
Query: 347 MVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREALEVMS 210
+VLPD YIDHGSPADQL++AGLTPSHIAATV N+LGQTREALEVM+
Sbjct: 674 IVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREALEVMT 719
>emb|CAD22530.1| 1-deoxy-D-xylulose 5-phosphate synthase 1 [Medicago truncatula]
Length = 717
Score = 193 bits (490), Expect = 1e-48
Identities = 95/106 (89%), Positives = 99/106 (92%)
Frame = -1
Query: 527 VTVADARFCKPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWRP 348
+TVADARFCKPLD SLIRSLAKSHE+LITVEEGSIGGFGSHV QFMALDGLLDG LKWRP
Sbjct: 612 LTVADARFCKPLDRSLIRSLAKSHEVLITVEEGSIGGFGSHVAQFMALDGLLDGNLKWRP 671
Query: 347 MVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREALEVMS 210
+VLPD YIDHGSPADQL AGLTPSHIAATV N+LGQTREALEVMS
Sbjct: 672 VVLPDRYIDHGSPADQLCMAGLTPSHIAATVFNILGQTREALEVMS 717
>gb|AAD56390.2|AF182286_1 1-deoxy-D-xylulose-5-phosphate synthase [Artemisia annua]
Length = 713
Score = 192 bits (489), Expect = 2e-48
Identities = 91/107 (85%), Positives = 102/107 (95%)
Frame = -1
Query: 530 HVTVADARFCKPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWR 351
++TVADARFCKPLDHSLIR+LAK+HE+LITVEEGSIGGFGSHV F+ALDGLLDG LKWR
Sbjct: 607 NITVADARFCKPLDHSLIRALAKTHEVLITVEEGSIGGFGSHVAHFLALDGLLDGNLKWR 666
Query: 350 PMVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREALEVMS 210
P+VLPD YIDHG+PADQL++AGLTPSHIAATV N+LGQTREALEVMS
Sbjct: 667 PLVLPDRYIDHGAPADQLAEAGLTPSHIAATVFNVLGQTREALEVMS 713
>pir||T52289 probable transketolase [imported] - Arabidopsis thaliana
(fragment) gi|2894445|emb|CAA74713.1| transketolase
[Arabidopsis thaliana]
Length = 739
Score = 183 bits (465), Expect = 1e-45
Identities = 88/103 (85%), Positives = 97/103 (93%)
Frame = -1
Query: 530 HVTVADARFCKPLDHSLIRSLAKSHEILITVEEGSIGGFGSHVVQFMALDGLLDGKLKWR 351
+VTVADARFCKPLD +LIRSLAKSHE+LITVEEGSIGGFGSHVVQF+ALDGLLDGKLKWR
Sbjct: 636 NVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWR 695
Query: 350 PMVLPDCYIDHGSPADQLSQAGLTPSHIAATVLNMLGQTREAL 222
PMVLPD YIDHG+PADQL++AGL PSHIAAT LN++G REAL
Sbjct: 696 PMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 738
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,978,878
Number of Sequences: 1393205
Number of extensions: 9446980
Number of successful extensions: 20386
Number of sequences better than 10.0: 167
Number of HSP's better than 10.0 without gapping: 19588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20294
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
