Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013686A_C01 KMC013686A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180818.1| hypothetical protein; protein id: At2g32590.1 [... 70 7e-13
dbj|BAB90324.1| putative condensin complex subunit [Oryza sativa... 67 7e-12
gb|EAA34549.1| hypothetical protein [Neurospora crassa] 52 3e-06
ref|NP_009455.1| BaRreN, a gene with sequence similarity to Dros... 49 4e-05
ref|NP_584654.1| hypothetical protein [Encephalitozoon cuniculi]... 39 0.030
>ref|NP_180818.1| hypothetical protein; protein id: At2g32590.1 [Arabidopsis
thaliana] gi|7487434|pir||T02558 hypothetical protein
At2g32590 [imported] - Arabidopsis thaliana
gi|3298547|gb|AAC25941.1| hypothetical protein
[Arabidopsis thaliana]
Length = 704
Score = 69.7 bits (169), Expect(2) = 7e-13
Identities = 34/58 (58%), Positives = 42/58 (71%), Gaps = 1/58 (1%)
Frame = -2
Query: 456 ETVSFRDMLTNFPS-CNAAATVTDISPHLCFICLLHLANEKGLSIENCPNLDDLSIYM 286
E+ SF+ +L +FP C AA DISPHLCFICLLHLANE LS+ NLDDL+I++
Sbjct: 646 ESRSFKVLLASFPDDCQAAERTQDISPHLCFICLLHLANEHNLSLIGSQNLDDLTIHL 703
Score = 25.0 bits (53), Expect(2) = 7e-13
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 535 DVQALKIALWDHIQESIQ 482
DVQ LK LW+ +QES Q
Sbjct: 610 DVQVLKETLWECLQESHQ 627
>dbj|BAB90324.1| putative condensin complex subunit [Oryza sativa (japonica
cultivar-group)]
Length = 684
Score = 67.0 bits (162), Expect(2) = 7e-12
Identities = 29/51 (56%), Positives = 38/51 (73%)
Frame = -2
Query: 435 MLTNFPSCNAAATVTDISPHLCFICLLHLANEKGLSIENCPNLDDLSIYMP 283
+L + PSCN A T+ISPHL FICLLHLANE L++ + P LD++ IY+P
Sbjct: 628 VLQDLPSCNPDAAATEISPHLYFICLLHLANEHSLTLRDRPTLDEIDIYIP 678
Score = 24.3 bits (51), Expect(2) = 7e-12
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 535 DVQALKIALWDHIQES 488
DV ALK LW+HI S
Sbjct: 593 DVHALKEVLWNHINTS 608
>gb|EAA34549.1| hypothetical protein [Neurospora crassa]
Length = 923
Score = 52.4 bits (124), Expect = 3e-06
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = -2
Query: 462 EKETVSFRDMLTNFPSCNAAATVTDISPHLCFICLLHLANEKGLSIENCPNLDDLSI 292
EK T+ F +++ + + DIS CFICLLHLANEKGL IE L +L I
Sbjct: 854 EKPTLKFTEVMNSLQKVYPKQAMDDISTSYCFICLLHLANEKGLVIEKSEELTELYI 910
>ref|NP_009455.1| BaRreN, a gene with sequence similarity to Drosophila barren and
Xenopus XCAP-H, and a functional homolog of human BRRN1;
Brn1p [Saccharomyces cerevisiae]
gi|586455|sp|P38170|YBJ7_YEAST HYPOTHETICAL 83.0 KD
PROTEIN IN ATP1-ROX3 INTERGENIC REGION
gi|626487|pir||S45403 hypothetical protein YBL097w -
yeast (Saccharomyces cerevisiae)
gi|496676|emb|CAA56003.1| C-728 protein [Saccharomyces
cerevisiae] gi|536160|emb|CAA84919.1| ORF YBL097w
[Saccharomyces cerevisiae]
Length = 728
Score = 48.9 bits (115), Expect = 4e-05
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = -2
Query: 450 VSFRDMLTNFPSCNAAATVTDISPHLCFICLLHLANEKGLSIENCPNLDDLSI 292
+ F D++ + T+ DIS CFICLLHLANE GL I + N +DL +
Sbjct: 664 LKFSDIIQGISKMYSDDTLKDISTSFCFICLLHLANEHGLQITHTENYNDLIV 716
>ref|NP_584654.1| hypothetical protein [Encephalitozoon cuniculi]
gi|19068690|emb|CAD25158.1| hypothetical protein
[Encephalitozoon cuniculi]
Length = 440
Score = 39.3 bits (90), Expect = 0.030
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = -2
Query: 390 DISPHLCFICLLHLANEKGLSIENCPNLDDLSIYM 286
DIS HLCFI LLHLANEK + ++ N D+ + M
Sbjct: 406 DISVHLCFISLLHLANEKNIQLKAVGN--DIEVQM 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,626,248
Number of Sequences: 1393205
Number of extensions: 8606726
Number of successful extensions: 17314
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17312
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
