Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013658A_C01 KMC013658A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197507.1| putative protein; protein id: At5g20070.1, supp... 100 8e-21
dbj|BAA83555.1| hypothetical protein [Oryza sativa (japonica cul... 92 3e-18
emb|CAA33190.1| MURF2 protein (AA 1-348) [Crithidia fasciculata] 34 0.94
ref|NP_042247.1| NADH dehydrogenase (ubiquinone), subunit 4 [Pro... 33 1.6
ref|NP_501518.1| Predicted CDS, putative membrane protein family... 33 2.1
>ref|NP_197507.1| putative protein; protein id: At5g20070.1, supported by cDNA:
gi_15146277, supported by cDNA: gi_19699163 [Arabidopsis
thaliana] gi|15146278|gb|AAK83622.1|
AT5g20070/F28I16_220 [Arabidopsis thaliana]
gi|19699164|gb|AAL90948.1| AT5g20070/F28I16_220
[Arabidopsis thaliana]
Length = 438
Score = 100 bits (250), Expect = 8e-21
Identities = 47/66 (71%), Positives = 61/66 (92%)
Frame = -3
Query: 528 DVRKALASARYKKAQRTAAAKVEQMCKGVDNNNRSLATDFNVESGEDAPIYVPGPYAIAH 349
+V+KALA A Y+KAQRTAAAKVEQ+CKGV+ + +SL+TDFN+ESGE AP+++PGP+AIAH
Sbjct: 353 EVKKALAVAEYRKAQRTAAAKVEQICKGVERS-QSLSTDFNLESGELAPMFIPGPFAIAH 411
Query: 348 HLISSW 331
HLIS+W
Sbjct: 412 HLISAW 417
>dbj|BAA83555.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 276
Score = 92.4 bits (228), Expect = 3e-18
Identities = 44/68 (64%), Positives = 54/68 (78%)
Frame = -3
Query: 528 DVRKALASARYKKAQRTAAAKVEQMCKGVDNNNRSLATDFNVESGEDAPIYVPGPYAIAH 349
DV+KAL A Y+KAQRT A KV Q+CKGV+ +S++ D +ES E AP++VPGPYAIAH
Sbjct: 197 DVKKALTFAEYEKAQRTNALKVNQICKGVEKR-QSISADLKIESEEPAPMFVPGPYAIAH 255
Query: 348 HLISSWAF 325
HLISSWAF
Sbjct: 256 HLISSWAF 263
>emb|CAA33190.1| MURF2 protein (AA 1-348) [Crithidia fasciculata]
Length = 347
Score = 34.3 bits (77), Expect = 0.94
Identities = 24/74 (32%), Positives = 38/74 (50%)
Frame = -1
Query: 233 LFFTVGNKNYLCHLSFYLQEYREVLAGDGIFSSSCYEDSTLLKIDSLIFYSALFFHVQLI 54
+F + G +LC +F+L I++ SCY +L LIF+ L+F+V I
Sbjct: 240 IFLSYGLALFLCCYTFWLFM---------IYTRSCY----VLLPSVLIFFKFLYFNVFFI 286
Query: 53 FYMIMILLILQICF 12
F ++IL I +CF
Sbjct: 287 FVFLLILFI--VCF 298
>ref|NP_042247.1| NADH dehydrogenase (ubiquinone), subunit 4 [Prototheca wickerhamii]
gi|3122533|sp|Q37617|NU4M_PROWI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4 gi|7432347|pir||T11916 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Prototheca wickerhamii mitochondrion
gi|467848|gb|AAD12635.1| NADH dehydrogenase
(ubiquinone), subunit 4 [Prototheca wickerhamii]
Length = 523
Score = 33.5 bits (75), Expect = 1.6
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -1
Query: 152 DGIFSSSCYEDSTLLKIDSLIFYSALFFHVQL----IFYMIMILLILQICFL 9
DG+ S + Y D TL K S +SAL F + + +F++I+ L++ IC L
Sbjct: 86 DGVCSPNVYSDVTLAKAASSSSFSALNFALGVDGISLFFIILTTLLVPICIL 137
>ref|NP_501518.1| Predicted CDS, putative membrane protein family member, with at
least 5 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7496917|pir||T19681
hypothetical protein C33D9.4 - Caenorhabditis elegans
gi|3874631|emb|CAA92285.1| C. elegans SRU-35 protein
(corresponding sequence C33D9.4) [Caenorhabditis
elegans]
Length = 323
Score = 33.1 bits (74), Expect = 2.1
Identities = 25/74 (33%), Positives = 38/74 (50%), Gaps = 6/74 (8%)
Frame = -1
Query: 227 FTVGNKNYLCHLSFYLQEY-REVLAGDGIFSSSC--YEDSTLLKIDSLIFYSALFFH--- 66
FT + N+ C LSF+ +Y R L GIF+S C + K LIF S F+
Sbjct: 59 FTFISINFFCSLSFFFSDYFRITLPATGIFTSWCASVRPNHFFK---LIFISTYIFNYCI 115
Query: 65 VQLIFYMIMILLIL 24
+ L FY+ +I +++
Sbjct: 116 LMLPFYISLIRVVI 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,274,152
Number of Sequences: 1393205
Number of extensions: 8748289
Number of successful extensions: 22911
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22899
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
